Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1435
(653 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00006A04BD Cluster: Laminin subunit alpha-1 precurso... 39 0.12
UniRef50_UPI0000DC03AC Cluster: UPI0000DC03AC related cluster; n... 37 0.37
UniRef50_P25391 Cluster: Laminin subunit alpha-1 precursor; n=34... 37 0.49
UniRef50_Q4SXM3 Cluster: Chromosome 12 SCAF12357, whole genome s... 36 1.1
UniRef50_Q8IB61 Cluster: Putative uncharacterized protein MAL8P1... 36 1.1
UniRef50_UPI0000DC20C6 Cluster: UPI0000DC20C6 related cluster; n... 35 2.0
UniRef50_Q80AZ8 Cluster: G5R-like protein; n=5; Parapoxvirus|Rep... 35 2.0
UniRef50_UPI00015A63B4 Cluster: UPI00015A63B4 related cluster; n... 34 2.6
UniRef50_Q45H72 Cluster: Laminin alpha 1; n=9; Euteleostomi|Rep:... 34 2.6
UniRef50_Q381I5 Cluster: Putative uncharacterized protein; n=1; ... 34 2.6
UniRef50_UPI0000F30F50 Cluster: UPI0000F30F50 related cluster; n... 34 3.4
UniRef50_Q0GLE1 Cluster: Dof11; n=4; core eudicotyledons|Rep: Do... 34 3.4
UniRef50_Q7QFE5 Cluster: ENSANGP00000020024; n=1; Anopheles gamb... 34 3.4
UniRef50_Q2TJF5 Cluster: Laminin alpha 4; n=9; Clupeocephala|Rep... 33 4.5
UniRef50_Q82BJ6 Cluster: Putative protease; n=1; Streptomyces av... 33 4.5
UniRef50_Q00741 Cluster: TamA; n=8; Trichocomaceae|Rep: TamA - E... 33 4.5
UniRef50_Q16363 Cluster: Laminin subunit alpha-4 precursor; n=40... 33 4.5
UniRef50_UPI0000DC07CE Cluster: UPI0000DC07CE related cluster; n... 33 7.9
UniRef50_UPI0000EB4A6B Cluster: Plexin-B3 precursor.; n=1; Canis... 33 7.9
UniRef50_Q0ES64 Cluster: Histidine kinase internal region precur... 33 7.9
UniRef50_Q1DK99 Cluster: Putative uncharacterized protein; n=1; ... 33 7.9
UniRef50_A4QU28 Cluster: Putative uncharacterized protein; n=1; ... 33 7.9
UniRef50_A3CRH0 Cluster: Putative uncharacterized protein; n=1; ... 33 7.9
UniRef50_P60372 Cluster: Keratin-associated protein 10-4; n=18; ... 33 7.9
>UniRef50_UPI00006A04BD Cluster: Laminin subunit alpha-1 precursor
(Laminin A chain).; n=3; Xenopus tropicalis|Rep: Laminin
subunit alpha-1 precursor (Laminin A chain). - Xenopus
tropicalis
Length = 3076
Score = 38.7 bits (86), Expect = 0.12
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = -3
Query: 219 NSTEPRDKLISSQSGPQE----YRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIY 52
N E + K S PQE + FDG GY+ + L + Q+++ FRT++PNGL+
Sbjct: 2283 NYVERKGKCGGCFSSPQEEDNAFHFDGSGYSIVEKT--LRSTATQIIIHFRTFSPNGLLL 2340
Query: 51 LLKAS 37
L ++
Sbjct: 2341 YLASN 2345
Score = 32.7 bits (71), Expect = 7.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 159 FDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLLKASVFEA 25
F+G GYA + GY + L FRT A NG++ + ++ +A
Sbjct: 2922 FEGTGYAALVKEGYKVRSDVNISLEFRTTAMNGVLLGISSAKVDA 2966
>UniRef50_UPI0000DC03AC Cluster: UPI0000DC03AC related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC03AC UniRef100 entry -
Rattus norvegicus
Length = 260
Score = 37.1 bits (82), Expect = 0.37
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -3
Query: 600 HNILTLLPHNNDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAH-HKNTHSHM* 424
H+ L H+ +HI ++ +TH+ H +T THT+ T H H TH+H
Sbjct: 112 HSHRQLHTHSYTHSHILTHSHTVTHTYTHT-------HTHTHTYSHTLTHSHTVTHTHS- 163
Query: 423 RTHNTSTQFLIF 388
TH S F IF
Sbjct: 164 HTHTLSAMFQIF 175
Score = 34.7 bits (76), Expect = 2.0
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Frame = -3
Query: 624 PKSVCLKNHNILTLLPHNNDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAH-H 448
P+ +HN L+ + H + TH A I +T THTH T H
Sbjct: 176 PRIKLCPHHNHTYLVSSTHTHTHTHTHTHTHTHEHTQAHIQRPWVHTHTHTHTHTHTHTQ 235
Query: 447 KNTHSHM*RTHNTSTQFLIFH 385
NTH H R H + + H
Sbjct: 236 TNTHVHT-RAHTHTLTHMYLH 255
>UniRef50_P25391 Cluster: Laminin subunit alpha-1 precursor; n=34;
Euteleostomi|Rep: Laminin subunit alpha-1 precursor -
Homo sapiens (Human)
Length = 3075
Score = 36.7 bits (81), Expect = 0.49
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -3
Query: 189 SSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLL 46
SSQ+ + FDG GY+ + L Q+++ F T++PNGL+ L
Sbjct: 2300 SSQNEDPSFHFDGSGYSVVEKS--LPATVTQIIMLFNTFSPNGLLLYL 2345
Score = 33.9 bits (74), Expect = 3.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 159 FDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLLKASVFEA 25
FDG GYA + GY + L FRT + NG++ + + +A
Sbjct: 2895 FDGSGYAALVKEGYKVQSDVNITLEFRTSSQNGVLLGISTAKVDA 2939
>UniRef50_Q4SXM3 Cluster: Chromosome 12 SCAF12357, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 12 SCAF12357, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 498
Score = 35.5 bits (78), Expect = 1.1
Identities = 18/63 (28%), Positives = 35/63 (55%)
Frame = -3
Query: 618 SVCLKNHNILTLLPHNNDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAHHKNT 439
++ + + +++ ++ + D+ H + Y + + V + A+ NT THTH TRAH T
Sbjct: 336 AIGMVDSSMMAIMGYLVDIRHASVYGSIYAIADVALCMGFAIGNTHTHTHTHTRAH---T 392
Query: 438 HSH 430
H+H
Sbjct: 393 HTH 395
>UniRef50_Q8IB61 Cluster: Putative uncharacterized protein
MAL8P1.45; n=2; Plasmodium|Rep: Putative uncharacterized
protein MAL8P1.45 - Plasmodium falciparum (isolate 3D7)
Length = 891
Score = 35.5 bits (78), Expect = 1.1
Identities = 21/76 (27%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = -3
Query: 603 NHNILTLLPHNNDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAH-HKNTHSHM 427
N+NI+ + H++ +H +++ +HS H+ + ++ +H+H + +H H N+HS+
Sbjct: 97 NNNIIIINSHSHSNSHSNSHSHSNSHSNSHS---HSNSHSNSHSHSNSHSHSHSNSHSNS 153
Query: 426 *RTHNTSTQFLIFHTT 379
+H +STQ ++H T
Sbjct: 154 -HSH-SSTQNSLYHDT 167
>UniRef50_UPI0000DC20C6 Cluster: UPI0000DC20C6 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC20C6 UniRef100 entry -
Rattus norvegicus
Length = 220
Score = 34.7 bits (76), Expect = 2.0
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -3
Query: 576 HNNDLNHITAYNKLITHS*VHALI*PAL-YNTQTHTHFVTRAHHKNTHSHM*RTHNTSTQ 400
H + HI + TH H + ++T THTH T H TH+H TH +
Sbjct: 147 HTHTQRHINSLIHTYTHRPSHTPNHSSTCHHTHTHTHTHTHTHTHTTHTHT-HTHTQKYK 205
Query: 399 FLIFHT 382
+ HT
Sbjct: 206 YTHIHT 211
>UniRef50_Q80AZ8 Cluster: G5R-like protein; n=5; Parapoxvirus|Rep:
G5R-like protein - Orf virus
Length = 298
Score = 34.7 bits (76), Expect = 2.0
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1
Query: 31 EDRRLEKVYQAVRSVRAEEEKHLIRLRRQITSASHRGISTAIEPVLLRARLRGDQFIPGF 210
ED++ ++ + +RAE++ L R+R Q++ A+H + + IE L RA GD F
Sbjct: 84 EDKQEDEHAEFAEEIRAEKQLKLQRIRFQLSIANHEVVKSLIESTLARA---GDAVEIVF 140
Query: 211 C 213
C
Sbjct: 141 C 141
>UniRef50_UPI00015A63B4 Cluster: UPI00015A63B4 related cluster; n=3;
Danio rerio|Rep: UPI00015A63B4 UniRef100 entry - Danio
rerio
Length = 451
Score = 34.3 bits (75), Expect = 2.6
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = -3
Query: 576 HNNDLN---HITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAHHKNTHSHM*RTHNTS 406
H++D++ H T+ + LI H +H+ I + T T+T + H ++ H+ TH TS
Sbjct: 266 HSSDIHIYTHQTSTSTLIRHQHLHSYIHIHTHETSTYT-LIRHPHLHSSDIHI-YTHRTS 323
Query: 405 TQFLIFH 385
T LI H
Sbjct: 324 TSILIRH 330
>UniRef50_Q45H72 Cluster: Laminin alpha 1; n=9; Euteleostomi|Rep:
Laminin alpha 1 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 3075
Score = 34.3 bits (75), Expect = 2.6
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = -3
Query: 189 SSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLLKAS 37
S ++ + FDG G++ + L S V++FF+T +PNGL+ L ++
Sbjct: 2303 SPRTEDTSFHFDGSGFSVVEKS--LRSMSTSVVMFFKTLSPNGLLLYLASN 2351
>UniRef50_Q381I5 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 1213
Score = 34.3 bits (75), Expect = 2.6
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +1
Query: 88 EKHLIRLRRQITSASHRGISTAIEPVLLRARLRGDQFIPGFCGVTCQ 228
E H++ LRR ++ S G+ TAI LLR RL G+ +PG +T +
Sbjct: 993 ETHVVGLRRLLSVVSVTGLFTAI---LLRFRLGGEALLPGAVPITSE 1036
>UniRef50_UPI0000F30F50 Cluster: UPI0000F30F50 related cluster; n=1;
Bos taurus|Rep: UPI0000F30F50 UniRef100 entry - Bos
Taurus
Length = 303
Score = 33.9 bits (74), Expect = 3.4
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -2
Query: 538 TYNALMSTRTNITGTI*HTNSHSLRNTRTS*KHTLTH-VTHSQ 413
T++ S +T T+ HT++H+L +T T HTLTH +TH Q
Sbjct: 262 THSHTHSHTHTLTHTLTHTHTHTLTHTHTH-SHTLTHTLTHKQ 303
>UniRef50_Q0GLE1 Cluster: Dof11; n=4; core eudicotyledons|Rep: Dof11
- Glycine max (Soybean)
Length = 285
Score = 33.9 bits (74), Expect = 3.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 243 QRLSQPSCQWRPSPDPGQVRSCPRCPSLHT 332
Q++S S + +P P P Q CPRC S +T
Sbjct: 9 QQMSSQSVEKKPKPHPEQALKCPRCDSTNT 38
>UniRef50_Q7QFE5 Cluster: ENSANGP00000020024; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000020024 - Anopheles gambiae
str. PEST
Length = 263
Score = 33.9 bits (74), Expect = 3.4
Identities = 24/82 (29%), Positives = 30/82 (36%)
Frame = -3
Query: 300 EPGQDPARVSIDKMVATTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRG 121
+PG D + +T T SSLT +T P + + QS G G G
Sbjct: 156 QPGTDKGSCTATTNTTSTTATTSSLTNGATTPTIQTATGQSLILANGGAGAPGGIANGSG 215
Query: 120 YLTPQSNQVLLFFRTYAPNGLI 55
L P S V L P G I
Sbjct: 216 QLVPASQSVQLLQHVMTPTGEI 237
>UniRef50_Q2TJF5 Cluster: Laminin alpha 4; n=9; Clupeocephala|Rep:
Laminin alpha 4 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 1871
Score = 33.5 bits (73), Expect = 4.5
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = -3
Query: 237 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYA---TMAGRGYLTPQSNQVLLFFRTYAP 67
K + ++ PR KL SQS Y FDG GYA + RG + + + + RT A
Sbjct: 1081 KMDVKASAPCPRHKLAFSQSRVTSYLFDGTGYALVNNIERRGKIGVVT-RFDIEVRTVAN 1139
Query: 66 NGLIYLL 46
NG+++L+
Sbjct: 1140 NGILFLM 1146
>UniRef50_Q82BJ6 Cluster: Putative protease; n=1; Streptomyces
avermitilis|Rep: Putative protease - Streptomyces
avermitilis
Length = 444
Score = 33.5 bits (73), Expect = 4.5
Identities = 25/109 (22%), Positives = 44/109 (40%)
Frame = -3
Query: 351 GIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVATTAGTKSSLTGNSTEPRDKLISSQSGP 172
G ++ P + +G + A S+D+ + ++ + + + G E I++
Sbjct: 320 GNESSRPQAIRPVGRPANCPSILAVASLDRALTVSSFSSAGINGQGGEVN---IAAPGRA 376
Query: 171 QEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLLKASVFEA 25
G GY +M+G TP VL APN LKAS+ +
Sbjct: 377 VHSAAPGGGYQSMSGTSMATPHVAGVLALLAQAAPNASAEDLKASLLSS 425
>UniRef50_Q00741 Cluster: TamA; n=8; Trichocomaceae|Rep: TamA -
Emericella nidulans (Aspergillus nidulans)
Length = 739
Score = 33.5 bits (73), Expect = 4.5
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +3
Query: 249 LSQPSCQWRPSPDPGQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCEC 422
L Q Q + SP P + + PR P+L G C R K R C + E+V KC C
Sbjct: 39 LQQQPLQPQQSPSPAPIGTLPRLPAL--GRDGPSCDACLRRKSR-CAMNEMVNKCYSC 93
>UniRef50_Q16363 Cluster: Laminin subunit alpha-4 precursor; n=40;
Tetrapoda|Rep: Laminin subunit alpha-4 precursor - Homo
sapiens (Human)
Length = 1823
Score = 33.5 bits (73), Expect = 4.5
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 204 RDKLISSQSGPQEYRFDGRGYATMAG--RGYLTPQSNQVLLFFRTYAPNGLIYLL 46
RDKL +QS Y FDG GYA + R Q + + RT A NGLI L+
Sbjct: 1037 RDKLAFTQSRAASYFFDGSGYAVVRDITRRGKFGQVTRFDIEVRTPADNGLILLM 1091
>UniRef50_UPI0000DC07CE Cluster: UPI0000DC07CE related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC07CE UniRef100 entry -
Rattus norvegicus
Length = 201
Score = 32.7 bits (71), Expect = 7.9
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 576 HNNDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAH-HKNTHSHM 427
H++ H + TH+ H I + Q HTH +AH H+NTH+HM
Sbjct: 62 HSHTYTHAGTHTHAGTHTQKHTHICRHSH-MQAHTHTHMQAHTHRNTHTHM 111
>UniRef50_UPI0000EB4A6B Cluster: Plexin-B3 precursor.; n=1; Canis
lupus familiaris|Rep: Plexin-B3 precursor. - Canis
familiaris
Length = 1467
Score = 32.7 bits (71), Expect = 7.9
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 162 CTLEGQTARRSIYPWVLWSYLSTMTWYQRLSQPSCQWRPSPDPGQVR-SCPRCPSL 326
CTL+GQ R + LWSY + + + P+ +RP + GQV S PR P+L
Sbjct: 103 CTLKGQCGRAAQANQWLWSYEDSHCPHVQSLLPA--YRPRQEQGQVTLSVPRLPTL 156
>UniRef50_Q0ES64 Cluster: Histidine kinase internal region
precursor; n=1; Thermoanaerobacter ethanolicus X514|Rep:
Histidine kinase internal region precursor -
Thermoanaerobacter ethanolicus X514
Length = 567
Score = 32.7 bits (71), Expect = 7.9
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = -3
Query: 327 VVMDIGDSSEPGQDPARVSIDKMVATTAGTKSSL----TGNS--TEPRDKLISSQSGPQE 166
+V DI + ++P A +S+D ++ A S + TG + + KLI S+
Sbjct: 170 LVFDIKNFAKP---IAVISVDMDMSKVASVVSDIHLGKTGKVYLVDDKGKLIYSEDKSFL 226
Query: 165 YRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNG 61
YR+ + Y + +G ++T N++++ + T NG
Sbjct: 227 YRYTTKLYNSSSGSDFITINGNKIMVIYNTLPQNG 261
>UniRef50_Q1DK99 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 226
Score = 32.7 bits (71), Expect = 7.9
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -3
Query: 291 QDPARVSIDKMVATTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRG 121
Q P +++ VA T G+ + +S + RD+++ Q GP + G + GRG
Sbjct: 35 QTPHSFLVEQAVAVTEGSGRTGPADSVQQRDRVVDHQFGPGQQLQQGPAPSGQGGRG 91
>UniRef50_A4QU28 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 1360
Score = 32.7 bits (71), Expect = 7.9
Identities = 26/78 (33%), Positives = 34/78 (43%)
Frame = -3
Query: 327 VVMDIGDSSEPGQDPARVSIDKMVATTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGR 148
VV G S G P ++D MVA+ G +S G S EPR SG G
Sbjct: 1273 VVEKAGPGSAGGWVPPSAAVD-MVASWTG--ASRNGRSAEPRSPGPMPTSGGGGGGAGGD 1329
Query: 147 GYATMAGRGYLTPQSNQV 94
G+ + RGY P+ + V
Sbjct: 1330 GHLPPSARGYQAPRVSSV 1347
>UniRef50_A3CRH0 Cluster: Putative uncharacterized protein; n=1;
Methanoculleus marisnigri JR1|Rep: Putative
uncharacterized protein - Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1)
Length = 223
Score = 32.7 bits (71), Expect = 7.9
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 130 SHRGISTAIEPVLLRARLRGDQFIPGFCGV--TCQR*LGT 243
+HRG EP L +AR R + P FCG TC +GT
Sbjct: 83 NHRGSPEKKEPALRQARKRAEAVQPAFCGTHGTCGAAIGT 122
>UniRef50_P60372 Cluster: Keratin-associated protein 10-4; n=18;
Eutheria|Rep: Keratin-associated protein 10-4 - Homo
sapiens (Human)
Length = 401
Score = 32.7 bits (71), Expect = 7.9
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Frame = +3
Query: 246 RLSQPSCQWRPSPDPGQVRSCPRC-PSLHTGIRSECRSPC--SRPKKR*CEILEIVLK-- 410
R+S P C P P Q C PS +S C+ C S P ++ C + + K
Sbjct: 62 RVSSPCCPVTCEPSPCQSGCTSSCTPSCCQ--QSSCQLACCASSPCQQAC-CVPVCCKTV 118
Query: 411 CCECVTCVSVCFYDVRVL-RSECEFVC 488
CC+ V CV VC D +S C+ C
Sbjct: 119 CCKPVCCVPVCCGDSSCCQQSSCQSAC 145
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,890,209
Number of Sequences: 1657284
Number of extensions: 15853600
Number of successful extensions: 47499
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 44589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47278
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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