Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1435
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   4.1  
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...    26   4.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   5.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   5.5  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    26   5.5  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    25   7.2  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   7.2  

>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 251 QPLVPSHR*QVTPQNPGIN*SPRSLALKSTGSMAVDMPRWLAEV 120
           Q   PS R +V PQ PG++ +P SL    + ++        +EV
Sbjct: 109 QMSTPSRRREVDPQRPGVS-TPSSLLFSGSDALTFSQAHPSSEV 151


>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 287 SWPGSELSPMSITTYGYPF 343
           SW G ELSP   T Y YP+
Sbjct: 208 SWAG-ELSPEDFTEYAYPY 225


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 207 VLWSYLS-TMTWYQRLSQPSCQWRPSPDPGQVRSCPRCPSLHTGIRSE 347
           +L  Y+  T  W+     PS +W  +    ++RSC  C   +  +R+E
Sbjct: 28  LLTQYIQPTFFWFAHDETPSFKWVLNAYHERLRSCTSCIQAYYELRNE 75


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = -2

Query: 550 SIQ*TYNALMSTRTNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISN 392
           SI  TY+A  S+ T IT +   T+     +T TS   TLT+ T      T SN
Sbjct: 146 SIAPTYSASDSSATTITSSSPSTSIIGTGSTDTSVSSTLTYHTPIASPTTSSN 198


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 196 IDLLAVWPSRVQVRWPWICHDG 131
           +DLL   PS  Q  W WI H G
Sbjct: 283 LDLLLHPPSSAQKNWSWIKHVG 304


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
 Frame = -2

Query: 487 HTNSHSLRNTRTS*KHT-----LTHVTHSQHFNTISNISH---YRFLGRLHGDRHSERIP 332
           +TNS+++ ++R S KHT       H   +   N+++++ H     F+    G + +E IP
Sbjct: 228 YTNSNTVTSSRISLKHTDPTKWQKHAKRTASSNSLTDLLHASNQTFMAPASGLQSTEEIP 287

Query: 331 VCS-DGH-RGQ 305
             S  GH RG+
Sbjct: 288 QFSKTGHSRGR 298


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +1

Query: 316 VHHYIRVSV--LNADHHVVVLKN 378
           VHH +R+S+  LN D HV  L+N
Sbjct: 292 VHHKLRLSISLLNPDGHVSELRN 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,248
Number of Sequences: 5004
Number of extensions: 62552
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)