Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1435
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498... 31 0.80
07_03_1177 - 24574682-24574852,24575047-24575618,24575711-245760... 30 1.9
05_04_0337 - 20372378-20373094,20373320-20373379,20373992-203742... 30 1.9
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 29 3.2
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611... 29 4.3
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 29 4.3
01_01_0577 + 4290014-4290325 29 4.3
02_03_0085 + 15063444-15063889,15064324-15065311 28 5.6
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086... 28 7.5
02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790 27 9.9
>01_06_1252 -
35748000-35748173,35748243-35748375,35749771-35749847,
35750465-35750509,35750584-35750679,35751125-35751130,
35751259-35751388,35751510-35751706
Length = 285
Score = 31.1 bits (67), Expect = 0.80
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = -3
Query: 288 DPARVSIDKMVATTAGTK-SSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLT 112
DP ++ + K +K SS G+ + +D I SG G A G GY+
Sbjct: 98 DPLKIYLHKYREMEGDSKLSSKAGDGSVKKDT-IGPHSGASSSSAQGMVGAYTQGMGYMQ 156
Query: 111 PQSN-QVLLFFRTYA 70
PQSN +L+ +++A
Sbjct: 157 PQSNFHILVVLQSFA 171
>07_03_1177 -
24574682-24574852,24575047-24575618,24575711-24576068,
24576108-24576152
Length = 381
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Frame = -3
Query: 309 DSSEPGQDPARV-SIDKMVATTAGTKSSLTGNSTEPRDKLISSQS--GPQEYRFDGRGYA 139
D S G + +R+ + D+ + T AG S + G E ++ + ++ +F+ + A
Sbjct: 155 DRSYNGGESSRIITFDEFIDTAAGAASRVVGIYPEIKNPVFVNRQVRWRDGKKFEDKFVA 214
Query: 138 TMAGRGY----LTPQSNQVLLFFRTYAPNGLIY 52
+ RGY ++P +F +++AP L+Y
Sbjct: 215 ALKRRGYGGRYMSPAWAARPVFIQSFAPTSLVY 247
>05_04_0337 -
20372378-20373094,20373320-20373379,20373992-20374266,
20374358-20374619
Length = 437
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 258 PSCQWRPSPDPGQVRSCPRCPSLHTGIRSECRSPCSRP 371
P+C+ RPSP + + S H ++ EC + + P
Sbjct: 252 PACRHRPSPSSSSTTTAQQHTSFHQLLQGECSAAAAAP 289
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 270 WRPSPDPGQVRSCPRCPSLHTG 335
WR SP ++ CP C HTG
Sbjct: 414 WRESPASRAMQKCPACKRTHTG 435
>05_05_0036 -
21758409-21758531,21758891-21759206,21759964-21761121,
21761236-21761333
Length = 564
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 160 VRWPWICHDGWPRLFDASI*SSASLLPHVRSE 65
VR+ W+C+D RL D S+ S S ++ E
Sbjct: 416 VRFEWVCYDSAKRLLDKSLYSVLSDFAQIQDE 447
>03_01_0149 -
1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 320 WTSGTAPNLARIRRGSPLTRWLRQPLVP 237
W G P LA G P W R+P++P
Sbjct: 150 WRDGKRPRLASGGVGGPRQEWRRRPMLP 177
>01_01_0577 + 4290014-4290325
Length = 103
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 315 IGDSSEPGQDPARVSIDKMVATTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYAT 136
+GD + PG+D A +A G + + T +T DK +S G R G G T
Sbjct: 1 MGDDTHPGEDRAGKGEGAQIAAVGGDRGAHTAAATTGLDKERASGIGYGGERGGGGGKTT 60
>02_03_0085 + 15063444-15063889,15064324-15065311
Length = 477
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -3
Query: 333 PYVVMDIGDSSEPGQDPARVSIDKMVATTAGTKSSLTGNSTEP 205
P V ++GD+ + G P V+ D + T + +G + EP
Sbjct: 305 PTVAWELGDNKDKGHAPCVVTKDSLEVTPTMCSTKCSGPTVEP 347
>04_04_0326 -
24407201-24407374,24407397-24407460,24408266-24408689,
24408885-24409057,24409178-24409275,24409723-24409853,
24410053-24410174,24411091-24411245,24411976-24412081,
24412328-24412419,24412499-24412620,24413444-24413544,
24413636-24413849,24414173-24414311,24415228-24415584
Length = 823
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -2
Query: 187 LAVWPSRVQVRWPWICHDGWPRLFDASI*SSASLLPHVRSERLDI 53
LAV PS PW CH R+ +A +S P R E +
Sbjct: 731 LAVTPSMFTDHLPWRCHYAMQRVLEAQTAASCPDSPESRIELFSV 775
>02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790
Length = 192
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 136 DGWPRL-FDASI*SSASLLPHVRSERLDIP 50
DG R+ FDAS S +L+P +RS R ++P
Sbjct: 131 DGLRRINFDASTNSMVALVPRLRSSRPELP 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,889,072
Number of Sequences: 37544
Number of extensions: 441040
Number of successful extensions: 1322
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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