Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1435
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81125-5|CAB03381.2| 398|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF408760-1|AAO27839.1| 318|Caenorhabditis elegans unknown prote... 29 2.9
Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 5.0
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 28 5.0
AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical... 28 5.0
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 5.0
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 5.0
U50311-5|AAX22295.1| 299|Caenorhabditis elegans Serpentine rece... 27 8.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 27 8.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 27 8.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 27 8.8
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 327 HTGIRSECRSPCSRPKKR*CEILEIVLKCCECVTCVSVCFYDVRVLRSECE 479
H+G + C+ P +R CE +E + V+C+SV Y+ L S CE
Sbjct: 1653 HSGFEGDGIKKCTNPLERSCEDVEKFCGRVDHVSCLSVRIYN-GSLSSVCE 1702
>Z81125-5|CAB03381.2| 398|Caenorhabditis elegans Hypothetical
protein T22A3.3a protein.
Length = 398
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 249 LSQPSCQWRPSPDPGQVRSCPRCPSLHTGIRSE 347
L+QPS W S D G + S P +G+RS+
Sbjct: 117 LNQPSNFWESSQDSGVLSSLSSSPQQRSGLRSQ 149
>AF408760-1|AAO27839.1| 318|Caenorhabditis elegans unknown protein
protein.
Length = 318
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 249 LSQPSCQWRPSPDPGQVRSCPRCPSLHTGIRSE 347
L+QPS W S D G + S P +G+RS+
Sbjct: 37 LNQPSNFWESSQDSGVLSSLSSSPQQRSGLRSQ 69
>Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical
protein T02E1.2 protein.
Length = 568
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 439 TLTH-VTHS-QHFNTISNISHYRFLGRLHGDRHSERIPV 329
TL H T+S QHF+ ++ Y+F G L D +E +P+
Sbjct: 342 TLAHFATYSFQHFDEFVHVVPYKFSGTLDRDLRNEIMPI 380
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -3
Query: 237 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 58
K + N + + K I+ + DG GY + + ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934
Query: 57 IYLL 46
++ +
Sbjct: 2935 LFFV 2938
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -3
Query: 237 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 58
K + N + + K I+ + DG GY + + ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934
Query: 57 IYLL 46
++ +
Sbjct: 2935 LFFV 2938
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -3
Query: 237 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 58
K + N + + K I+ + DG GY + + ++ ++ L F T++P+GL
Sbjct: 690 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 748
Query: 57 IYLL 46
++ +
Sbjct: 749 LFFV 752
>AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical
protein Y75B8A.14 protein.
Length = 272
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +1
Query: 208 FCGVTCQR*LGTSGCRNHLVNGDPRRILARFGAVPDVHHYIRVSVLNADHHVVVLKNGSV 387
+C V L T G +VN DP + + AV DV I V+ + D +++ NG++
Sbjct: 18 YCSVMYNHCLST-GRTLRMVNLDPACEVFNYPAVVDVRDLISVNDVQEDEELILGPNGAL 76
Query: 388 KY 393
+
Sbjct: 77 VF 78
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -3
Query: 237 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 58
K + N + + K I+ + DG GY + + ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934
Query: 57 IYLL 46
++ +
Sbjct: 2935 LFFV 2938
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -3
Query: 237 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 58
K + N + + K I+ + DG GY + + ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934
Query: 57 IYLL 46
++ +
Sbjct: 2935 LFFV 2938
>U50311-5|AAX22295.1| 299|Caenorhabditis elegans Serpentine
receptor, class sx protein34, isoform c protein.
Length = 299
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 572 LCGNSVRIL*FLRHTDLGSPQH 637
+ GNS+ I+ FL+H L SP H
Sbjct: 21 IIGNSIMIIAFLKHAKLRSPCH 42
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 274 DPRRILARFGAVPDVHHYIRVSVLNAD--HHVVVLKNGSVKY*KLC 405
DPRR ARF A+ D HH I S +NAD V L ++K + C
Sbjct: 1068 DPRR--ARF-ALTDFHHCIESSRVNADEIRKTVQLTENNIKKLENC 1110
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 274 DPRRILARFGAVPDVHHYIRVSVLNAD--HHVVVLKNGSVKY*KLC 405
DPRR ARF A+ D HH I S +NAD V L ++K + C
Sbjct: 1068 DPRR--ARF-ALTDFHHCIESSRVNADEIRKTVQLTENNIKKLENC 1110
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 274 DPRRILARFGAVPDVHHYIRVSVLNAD--HHVVVLKNGSVKY*KLC 405
DPRR ARF A+ D HH I S +NAD V L ++K + C
Sbjct: 651 DPRR--ARF-ALTDFHHCIESSRVNADEIRKTVQLTENNIKKLENC 693
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,013,790
Number of Sequences: 27780
Number of extensions: 378085
Number of successful extensions: 1055
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -