Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1434
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    31   0.20 
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       27   3.3  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    26   4.4  

>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
 Frame = +1

Query: 262  MSDIITSCLQLQKNISTNRIVVKEINGCD-GSFI---VNCVISYCIK-RNSPLLIVSSHN 426
            +S I    +QL+KNI    + V   N  D G ++     C+ ++  K R +PL I     
Sbjct: 1509 ISRIRYMAVQLEKNIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPKDRPNPLTIHLQSF 1568

Query: 427  SITHYHNVGLRMNHNLFKS 483
            SITH+ ++ L M+  +++S
Sbjct: 1569 SITHFPSLMLAMSKPIYRS 1587


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 555 IQHTPLYW-LMLRHQNQIIYHPSLTTFKQ 472
           +Q TP  W L L H+ QI+Y P +    Q
Sbjct: 69  LQPTPELWTLALPHRTQIVYTPDIALIHQ 97


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -1

Query: 147 IYLIRKLLLFNNMVLMTLYPKKLN---TLFLFLFPVHNHIYSHREQAHDM 7
           I L  ++ L  NM+      +K +   TL   L P+H  I+S  E+ HD+
Sbjct: 482 IVLEEQVFLVENMIEDAKAKRKFSEVETLLSSLAPLHEEIHSITEKIHDL 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,651
Number of Sequences: 5004
Number of extensions: 49651
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)