Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1434
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.2  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 315 VGRYIFLQL*T*CYNVRHPASTC 247
           VG+  F  + T CY + HP + C
Sbjct: 111 VGKMYFNLIDTKCYKLEHPVTGC 133


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 315 VGRYIFLQL*T*CYNVRHPASTC 247
           VG+  F  + T CY + HP + C
Sbjct: 116 VGKMYFNLIDTKCYKLEHPVTGC 138


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 315 VGRYIFLQL*T*CYNVRHPASTC 247
           VG+  F  + T CY + HP + C
Sbjct: 116 VGKMYFNLIDTKCYKLEHPVTGC 138


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 559 SDSAYSIILVNVASPKSNNLSPQP 488
           +D  ++ I+   ASP+S N SP P
Sbjct: 724 TDIIHNYIMRGEASPRSPNASPSP 747


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 274 ITSCLQLQKNISTNRIVVKEINGCDGSFIVNCVISYCIKRNSPLLIVSSHNSITHYHNVG 453
           +T C     ++  NR ++    GC  + ++  V S   K N  LL V  H  +T + N+ 
Sbjct: 209 MTFCRVFPFHLMFNRDLIIVQTGCTITRVIPQVCSGNCKLNDILLTVRPHLELT-FENIL 267

Query: 454 LRMN 465
             +N
Sbjct: 268 SHIN 271


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 274 ITSCLQLQKNISTNRIVVKEINGCDGSFIVNCVISYCIKRNSPLLIVSSHNSITHYHNVG 453
           +T C     ++  NR ++    GC  + ++  V S   K N  LL V  H  +T + N+ 
Sbjct: 209 MTFCRVFPFHLMFNRDLIIVQTGCTITRVIPQVCSGNCKLNDILLTVRPHLELT-FENIL 267

Query: 454 LRMN 465
             +N
Sbjct: 268 SHIN 271


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 523 ASPKSNNLSPQPHN 482
           +SPK  N +PQP N
Sbjct: 23  SSPKKRNKNPQPKN 36


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 237 E*TSKLKQDV*HYNIMSTIA 296
           E + KL++DV +YN  S +A
Sbjct: 433 ELSEKLREDVINYNCRSLVA 452


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 237 E*TSKLKQDV*HYNIMSTIA 296
           E + KL++DV +YN  S +A
Sbjct: 401 ELSEKLREDVINYNCRSLVA 420


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 520 SPKSNNLSPQPHNF*TDYGSFLNQHCGNE 434
           SP  + L+ QPH       S  N HC  +
Sbjct: 43  SPSPSLLTSQPHQDHNKEKSKNNHHCNQD 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,409
Number of Sequences: 438
Number of extensions: 3645
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)