Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1433X
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    31   0.093
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    29   0.50 
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    29   0.65 
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    28   1.1  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    26   4.6  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   6.1  

>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 31.5 bits (68), Expect = 0.093
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 140 RCEYARRWRTAPT--WRMIALPSWRLNCHRRTHRRGVGQENEEV 265
           RC   RR  T     WR +    W+++ HR+  R+   +E +EV
Sbjct: 56  RCPACRRLYTEENVQWRPVTAEEWKMDLHRKNERKKREKERKEV 99


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 195 NAIILHVGAVLQRLAYSHRIHRRPGW 118
           NAI+LH G      A+SH  +  PGW
Sbjct: 117 NAILLHTGLSASSHAHSHPENTAPGW 142


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +1

Query: 154 KALENRTNMEDDRVAILEAQLSQANSSPRSRTRKRRG 264
           KA+ NRT    ++VAI   Q +Q N+ PR   RKR+G
Sbjct: 140 KAIHNRTG---EKVAIKVVQRAQPNTDPRD-PRKRQG 172


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 210 STVTGELIAEESDKKTKRLLVSWPWLRLTWSAPRSV 317
           S V+G+L    S  +T R LV+ PWL+  W A R+V
Sbjct: 132 SLVSGDL----SKSRTDRALVT-PWLKFLWDAYRTV 162


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +1

Query: 487 RVRRAFREKLQKEVDRLEDDLVAEREKS--KLLQ 582
           R++ A  +KLQ+   +L D+ +AE EK+  KLL+
Sbjct: 497 RLQEAEAKKLQERTSKLTDEDIAEIEKTSVKLLE 530


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 18/84 (21%), Positives = 33/84 (39%)
 Frame = +2

Query: 206 RLNCHRRTHRRGVGQENEEVARKLAMVEADLXXXXXXXXXXXXKIVELEEELRVVGNNLK 385
           +LN  R       G + E+ A +   ++ ++            K  +L   L  +G NL 
Sbjct: 435 QLNTERARENNLGGSQIEKRANESNNLQREIADLSEQIVELESKRNDLHSALLEMGGNLT 494

Query: 386 SLEVSEEKATKREETYXTHLKLLD 457
           SL   ++    +      HLK+L+
Sbjct: 495 SLLTKKDSIANKISDQSEHLKVLE 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,788
Number of Sequences: 5004
Number of extensions: 29149
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)