Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1433X
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13... 31 0.51
02_01_0503 + 3669758-3670059,3670351-3670870 31 0.51
02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175... 29 2.0
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 29 2.7
01_06_0226 - 27684093-27685091 29 2.7
01_04_0051 + 15430980-15431591 29 2.7
11_05_0020 + 18430006-18430191,18431675-18431746,18432380-18432538 29 3.6
09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004 29 3.6
07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428... 29 3.6
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 28 6.2
11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160 28 6.2
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 28 6.2
11_04_0221 + 15021145-15022497 27 8.2
05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142... 27 8.2
01_03_0202 - 13762042-13762572 27 8.2
>07_01_0020 -
127855-129156,129240-129365,129811-129865,130047-130177
Length = 537
Score = 31.5 bits (68), Expect = 0.51
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +2
Query: 335 KIVELEEELRVVGNNLKSLEVSEEKATKREE 427
+IVE+EEE R++ L+ +V+EEKA REE
Sbjct: 159 EIVEMEEEKRLMSRKLR--KVAEEKAAAREE 187
>02_01_0503 + 3669758-3670059,3670351-3670870
Length = 273
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 83 ASRDRHRQAVRGQPGRR*IRCEYARRWRTAPTWRMIALPSW 205
+SR + R +PGR C +RW +P W +I P W
Sbjct: 78 SSRTKKMDEERRRPGRDPFSCRSGQRWNWSP-WHVIQRPWW 117
>02_01_0266 -
1758439-1758599,1758682-1758769,1759363-1759564,
1759664-1759800,1760169-1760268,1760350-1760522,
1760797-1760941,1761018-1761139,1761225-1761470,
1761962-1762182,1762278-1762338,1762409-1762487,
1762572-1762651,1763221-1763292,1763382-1763449,
1763550-1763588,1763828-1763903,1763992-1764006
Length = 694
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +1
Query: 466 QRG*STCRVRRAFREK-LQKEVDRLEDDLVAEREKSKLLQ 582
++G +T +A R+K LQKE+D LE L++ R++ LLQ
Sbjct: 374 KQGRATQFANKAARDKWLQKEIDDLERVLLSNRKQEGLLQ 413
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +1
Query: 466 QRG*STCRVRRAFREK-LQKEVDRLEDDLVAEREKSKLLQ 582
++G +T +A R+K LQKE+D LE L++ R++ LLQ
Sbjct: 273 KQGRATQFANKAARDKWLQKEIDDLECVLLSNRKQGGLLQ 312
>01_06_0226 - 27684093-27685091
Length = 332
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 359 APPQAQRFWIRRTRHAPRRAPSQPQPWPAYEQPL 258
+PP+ +RR +P R+PS P P PA PL
Sbjct: 127 SPPRGLPM-MRRRLESPSRSPSPPSPTPAVALPL 159
>01_04_0051 + 15430980-15431591
Length = 203
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 56 GGGPREVRGASRDRHRQAVRGQP 124
GG P V+ A RD HR+A+R +P
Sbjct: 93 GGAPAWVQDARRDAHRRALRRRP 115
>11_05_0020 + 18430006-18430191,18431675-18431746,18432380-18432538
Length = 138
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/56 (32%), Positives = 22/56 (39%)
Frame = +2
Query: 62 GPREVRGASRDRHRQAVRGQPGRR*IRCEYARRWRTAPTWRMIALPSWRLNCHRRT 229
GP G RDR A+ P R E + R TWR + SW +N T
Sbjct: 9 GPNVAEGVRRDRRGNAMDNVPDPR---GEASERGAAQWTWRAGTIGSWTVNTRTLT 61
>09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004
Length = 258
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 53 AGGGPREVRGASRDRHRQAVRGQPGRR*IRCEYARR 160
AGGG R R RHR+A RG R R ++ RR
Sbjct: 126 AGGGWRHAGAGGRRRHRRARRGAVRLRRRRQQWRRR 161
>07_01_0577 -
4286048-4286186,4286600-4286660,4286957-4287089,
4287286-4287350,4288346-4288451,4288529-4288750,
4289619-4289852,4289948-4290037,4290605-4291507
Length = 650
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 356 PPQAQRFWIRRTRHAPRRAPSQPQPWPAYEQPL 258
PP+ +R + RHA P P P PA E L
Sbjct: 38 PPKKRRLFTPAPRHAATPPPPPPPPTPAVEPTL 70
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 262 LFVFLSDSSAMSSPVTVEPPRWQRDHPPCW 173
+F +L + SA+ + + VE P PPCW
Sbjct: 396 MFAWLKNPSAVPTTLEVEIPERAGGGPPCW 425
>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
Length = 306
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 232 MSSPVTVEPPRWQRDHPPCWCGSPAPC 152
M++P VE P W P C +P PC
Sbjct: 213 MATPTMVEIPSWPAAPAPPSCCAPPPC 239
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +2
Query: 23 SGCPEPTYPTAGGGPREVRGASRDRHRQAVR 115
SG PEPT A G VRG DR A +
Sbjct: 192 SGMPEPTSRAAAGAEAGVRGIMMDRFLPAAQ 222
>11_04_0221 + 15021145-15022497
Length = 450
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 105 WRWRSRDAPRTSRGPPPAV 49
W +RDAPRT+ PPP V
Sbjct: 330 WDSPARDAPRTTPPPPPPV 348
>05_01_0197 -
1417672-1417899,1418921-1418974,1419267-1419552,
1421768-1422291
Length = 363
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 116 GQPGRR*IRCEYARRWRTAPTW 181
G P RR RC + RRWR W
Sbjct: 46 GIPSRRRRRCAWIRRWRRRGGW 67
>01_03_0202 - 13762042-13762572
Length = 176
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 138 IHRRPGWPRTAW-RWRSRDAPRTSRGPPPA 52
I RRP TA R R+R PRT R PP+
Sbjct: 44 IRRRPSASATATVRRRARTRPRTRRSKPPS 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,768,327
Number of Sequences: 37544
Number of extensions: 288827
Number of successful extensions: 1419
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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