BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1433X (583 letters) Database: mosquito 2352 sequences; 563,979 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY705404-1|AAU12513.1| 406|Anopheles gambiae nicotinic acetylch... 26 1.0 AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 25 1.4 AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript... 25 2.4 AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. 24 4.1 AF532982-1|AAQ10289.1| 459|Anopheles gambiae putative RNA methy... 24 4.1 AY146749-1|AAO12064.1| 336|Anopheles gambiae odorant-binding pr... 23 5.5 AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein. 23 9.5 AY027891-1|AAK15783.1| 801|Anopheles gambiae collagen IV alpha ... 23 9.5 >AY705404-1|AAU12513.1| 406|Anopheles gambiae nicotinic acetylcholine receptor subunitalpha 9 protein. Length = 406 Score = 25.8 bits (54), Expect = 1.0 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = +3 Query: 198 HLGGSTV-TGELIAEESDKKTKRLLVSWPWLRLTWSAPRSVPSPAN 332 H +TV TG I + K L + W++ +W+ P+ +PA+ Sbjct: 59 HYNVTTVETGITITHVEINEIKSTLSVYGWMKFSWNDPKLTWNPAS 104 >AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase protein. Length = 1248 Score = 25.4 bits (53), Expect = 1.4 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 389 EISGCYQRHGAPPQAQRFWIRRTRHA 312 E + C+QR+ A P+A R IRR A Sbjct: 849 EDARCHQRYLADPEASRAVIRREERA 874 >AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase protein. Length = 1222 Score = 24.6 bits (51), Expect = 2.4 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 177 VGAVLQRLAYSHRIHRRPGWPRTAWRWRSR 88 VG +LQR A R P + RWR+R Sbjct: 210 VGELLQRPAADSRRQEGPSTRESGTRWRTR 239 >AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. Length = 1229 Score = 23.8 bits (49), Expect = 4.1 Identities = 9/27 (33%), Positives = 15/27 (55%) Frame = +2 Query: 368 VGNNLKSLEVSEEKATKREETYXTHLK 448 + N K +E + +A KR+E H+K Sbjct: 427 IEENYKKIESEKNEALKRQEKLIDHIK 453 >AF532982-1|AAQ10289.1| 459|Anopheles gambiae putative RNA methylase protein. Length = 459 Score = 23.8 bits (49), Expect = 4.1 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 4/71 (5%) Frame = +2 Query: 242 VGQENEEVARKLAMVEADLXXXXXXXXXXXXKIVELEEELRV-VGNNLKSLEVSEE--KA 412 VG +N+E ARKLA L + + LR + N +SL E K+ Sbjct: 50 VGLQNDEAARKLASRSMSLRCIFELWAHSNEGLANFHQALRQHIETNAQSLATHFEANKS 109 Query: 413 TK-REETYXTH 442 K ETY H Sbjct: 110 FKITVETYNKH 120 >AY146749-1|AAO12064.1| 336|Anopheles gambiae odorant-binding protein AgamOBP38 protein. Length = 336 Score = 23.4 bits (48), Expect = 5.5 Identities = 8/14 (57%), Positives = 8/14 (57%) Frame = +2 Query: 512 NCKRRSIGLKTIWW 553 NC R IGL WW Sbjct: 68 NCLLRCIGLNARWW 81 >AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein. Length = 1132 Score = 22.6 bits (46), Expect = 9.5 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = +1 Query: 505 REKLQKEVDRLEDDLVAEREKSK 573 +++++KEVD EDD E E+ + Sbjct: 954 QKEVKKEVDAAEDDEEEEEEEQE 976 >AY027891-1|AAK15783.1| 801|Anopheles gambiae collagen IV alpha 1 chain precursor protein. Length = 801 Score = 22.6 bits (46), Expect = 9.5 Identities = 12/36 (33%), Positives = 15/36 (41%) Frame = +2 Query: 20 RSGCPEPTYPTAGGGPREVRGASRDRHRQAVRGQPG 127 R G P P P GP+ +G + RGQ G Sbjct: 409 RPGAPGPKGPRGYEGPQGPKGMDGFDGEKGERGQMG 444 Database: mosquito Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 563,979 Number of sequences in database: 2352 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 467,810 Number of Sequences: 2352 Number of extensions: 7923 Number of successful extensions: 34 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 34 length of database: 563,979 effective HSP length: 61 effective length of database: 420,507 effective search space used: 55506924 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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