Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1433X
         (583 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    26   1.0  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    25   1.4  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   2.4  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   4.1  
AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA methy...    24   4.1  
AY146749-1|AAO12064.1|  336|Anopheles gambiae odorant-binding pr...    23   5.5  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          23   9.5  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   9.5  

>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 198 HLGGSTV-TGELIAEESDKKTKRLLVSWPWLRLTWSAPRSVPSPAN 332
           H   +TV TG  I      + K  L  + W++ +W+ P+   +PA+
Sbjct: 59  HYNVTTVETGITITHVEINEIKSTLSVYGWMKFSWNDPKLTWNPAS 104


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 389 EISGCYQRHGAPPQAQRFWIRRTRHA 312
           E + C+QR+ A P+A R  IRR   A
Sbjct: 849 EDARCHQRYLADPEASRAVIRREERA 874


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 177 VGAVLQRLAYSHRIHRRPGWPRTAWRWRSR 88
           VG +LQR A   R    P    +  RWR+R
Sbjct: 210 VGELLQRPAADSRRQEGPSTRESGTRWRTR 239


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 368 VGNNLKSLEVSEEKATKREETYXTHLK 448
           +  N K +E  + +A KR+E    H+K
Sbjct: 427 IEENYKKIESEKNEALKRQEKLIDHIK 453


>AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA
           methylase protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
 Frame = +2

Query: 242 VGQENEEVARKLAMVEADLXXXXXXXXXXXXKIVELEEELRV-VGNNLKSLEVSEE--KA 412
           VG +N+E ARKLA     L             +    + LR  +  N +SL    E  K+
Sbjct: 50  VGLQNDEAARKLASRSMSLRCIFELWAHSNEGLANFHQALRQHIETNAQSLATHFEANKS 109

Query: 413 TK-REETYXTH 442
            K   ETY  H
Sbjct: 110 FKITVETYNKH 120


>AY146749-1|AAO12064.1|  336|Anopheles gambiae odorant-binding
           protein AgamOBP38 protein.
          Length = 336

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 512 NCKRRSIGLKTIWW 553
           NC  R IGL   WW
Sbjct: 68  NCLLRCIGLNARWW 81


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 505  REKLQKEVDRLEDDLVAEREKSK 573
            +++++KEVD  EDD   E E+ +
Sbjct: 954  QKEVKKEVDAAEDDEEEEEEEQE 976


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 20  RSGCPEPTYPTAGGGPREVRGASRDRHRQAVRGQPG 127
           R G P P  P    GP+  +G       +  RGQ G
Sbjct: 409 RPGAPGPKGPRGYEGPQGPKGMDGFDGEKGERGQMG 444


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,810
Number of Sequences: 2352
Number of extensions: 7923
Number of successful extensions: 34
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55506924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)