Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1433X
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   8.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.9  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 438 LILNYWTPNSKRLKH 482
           L LN W P   RL+H
Sbjct: 127 LYLNIWVPQKYRLRH 141


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 438 LILNYWTPNSKRLKH 482
           L LN W P   RL+H
Sbjct: 127 LYLNIWVPQKYRLRH 141


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 353 PQAQRFWIRRTRHAPRRAPSQPQPWPAYEQP 261
           PQ Q+   ++ +   ++   Q Q WP  E+P
Sbjct: 440 PQQQQQQQQQQQQQQQQQQQQQQHWPMEEEP 470


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -2

Query: 114 RTAWRWRSRDAPRTSRGPPPAV 49
           R  W+ RSRD     R   P +
Sbjct: 60  RETWKERSRDRTERERSREPKI 81


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -2

Query: 114 RTAWRWRSRDAPRTSRGPPPAV 49
           R  W+ RSRD     R   P +
Sbjct: 60  RETWKERSRDRTERERSREPKI 81


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -2

Query: 114 RTAWRWRSRDAPRTSRGPPPAV 49
           R  W+ RSRD     R   P +
Sbjct: 60  RETWKERSRDRTERERSREPKI 81


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -2

Query: 114 RTAWRWRSRDAPRTSRGPPPAV 49
           R  W+ RSRD     R   P +
Sbjct: 60  RETWKERSRDRTERERSREPKI 81


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 444 LNYWTPNSKRLKHVPSSPSVP*ET 515
           +N W P S  +   PS+ +VP  T
Sbjct: 754 VNLWQPLSVSIPPPPSAQNVPQNT 777


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,582
Number of Sequences: 438
Number of extensions: 2440
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)