Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1432
         (710 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P58145 Cluster: Ribosomal operon-associated A protein; ...    35   2.3  
UniRef50_UPI0000499FC0 Cluster: zinc finger protein; n=1; Entamo...    31   6.3  
UniRef50_Q5U6G7 Cluster: Orf310 protein; n=2; Beta vulgaris subs...    33   9.2  

>UniRef50_P58145 Cluster: Ribosomal operon-associated A protein;
           n=1; Euglena longa|Rep: Ribosomal operon-associated A
           protein - Astasia longa (Euglenophycean alga)
          Length = 519

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 22/94 (23%), Positives = 45/94 (47%)
 Frame = -2

Query: 283 MLKNYNCRFKSIK*VIHPQYKRLFRTRLMNNTKAIVIFVFWCFFFKQKTHFSCRIMYT*F 104
           + K++  RF S++  +   +   F++ ++++ +   I  F C+    K +F   + +   
Sbjct: 53  LFKSFYTRFVSVRDSVDNNF--FFKSNIISSKEKFFIVFFLCY----KRNFFYNLFFYNI 106

Query: 103 SLTNLSYLLEFFYFQTFIYYYKEKSVIYRRLKGK 2
            + NLS+   FF F  F +    K V+Y  L+ K
Sbjct: 107 EIINLSFKFNFFLFYKFCFNNLVKFVMYPFLELK 140


>UniRef50_UPI0000499FC0 Cluster: zinc finger protein; n=1; Entamoeba
           histolytica HM-1:IMSS|Rep: zinc finger protein -
           Entamoeba histolytica HM-1:IMSS
          Length = 198

 Score = 31.5 bits (68), Expect(2) = 6.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 190 TKAIVIFVFWCFFFKQKTHFSCRIMYT*FSLTNLSYLLEFFY-FQTFIY 47
           T  +   +F  F FK K H  CR++   F   N+S L EF+   +T +Y
Sbjct: 111 TTGLNCIIFLLFQFK-KLHIECRLISLGFLFGNISILFEFYQNLKTIVY 158



 Score = 20.6 bits (41), Expect(2) = 6.3
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -2

Query: 319 YNYFFNFIIFREMLKNYNC 263
           Y Y++ F++F  +    NC
Sbjct: 98  YLYYYLFVLFTVITTGLNC 116


>UniRef50_Q5U6G7 Cluster: Orf310 protein; n=2; Beta vulgaris subsp.
           vulgaris|Rep: Orf310 protein - Beta vulgaris subsp.
           vulgaris
          Length = 310

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 181 IVIFVFWC---FFFKQKTHFSCRIMYT*FSLTNLSYLLEFFYFQT 56
           +++F F C   FF+++K HF C  +   F L   SY L  F F+T
Sbjct: 51  LILFFFICLCIFFYRRKGHF-CLFLLIHFLLLLFSYFLRSFLFET 94


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,928,735
Number of Sequences: 1657284
Number of extensions: 11903200
Number of successful extensions: 22649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22630
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)