Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1432
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.0  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.5  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   4.6  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    26   4.6  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   8.1  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = -2

Query: 241 VIHPQYKRLFRTRLMNNTKAIVIFVFWCFFF----KQKTHFSCRIMYT*FSLTNLSYLLE 74
           ++  Q++RL      ++T  I  F +W FFF         F   I    +    + +   
Sbjct: 51  LVSSQFRRLKLPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCF 110

Query: 73  FFYFQTFIYY 44
           FFYF  F ++
Sbjct: 111 FFYFSLFSFF 120


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 565 CVVCYIRLVCK*YC 606
           CVVC++ ++C+ YC
Sbjct: 35  CVVCFVSVLCRLYC 48


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 122 HHVYII*SNKFVISFRVLLLSNIYILLQRKISYISTLER 6
           HHV    +N +VI    +L+   ++L + K + I+ +ER
Sbjct: 682 HHVLYSLANTYVICILGVLIWQFFLLSRSKFAKINVIER 720


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 466 VHFIHNKRGQPTMTCRWHVCFALTLHLILSRAPCVVCY 579
           V+F+ N         RW + F     L+LS   CV+CY
Sbjct: 652 VYFVQNAIPTKRQN-RWRITFISISGLLLSVGICVLCY 688


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 190 YYSLISFEIAFCIEDELLI 246
           YY +ISF  AF I+ E+++
Sbjct: 13  YYFIISFSYAFSIKQEIIV 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,161
Number of Sequences: 5004
Number of extensions: 58018
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)