Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1432
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)              33   0.23 
SB_18357| Best HMM Match : Phage_integrase (HMM E-Value=0.0063)        29   4.9  

>SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)
          Length = 1120

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +1

Query: 460 VFVHFIHNKRGQPTMTCRWHVCFALTLHLILSRAPCVVCYIRLVCK*YC 606
           V +H I NKR    ++ R HVC A+ LH I ++    V  +R VC   C
Sbjct: 823 VCLHRIRNKRRLSVISVR-HVCTAVCLHRIRNKRRLSVISVRHVCTAVC 870



 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 481 NKRGQPTMTCRWHVCFALTLHLILSRAPCVVCYIRLVCK*YC 606
           +KR    M+ R HVC A+ LH I ++    V  +R VC   C
Sbjct: 807 HKRRLSVMSIR-HVCTAVCLHRIRNKRRLSVISVRHVCTAVC 847


>SB_18357| Best HMM Match : Phage_integrase (HMM E-Value=0.0063)
          Length = 683

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 519 MPTACHSRLTPFIVYKMNKHKFVFKECLINHNSFISN 409
           + +A  S +T F+VYK  K +   K+CL N    +SN
Sbjct: 501 LTSASPSDITRFLVYKDRKGRTKIKKCLDNKVFLVSN 537


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,339,891
Number of Sequences: 59808
Number of extensions: 362874
Number of successful extensions: 594
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)