Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1432
         (710 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3185|AAG22188.1| 1542|Drosophila melanogaster CG9485-PA...    29   4.7  
AE013599-3184|AAF46713.3| 1546|Drosophila melanogaster CG9485-PC...    29   4.7  
AE013599-3183|AAM70868.2| 1629|Drosophila melanogaster CG9485-PB...    29   4.7  

>AE013599-3185|AAG22188.1| 1542|Drosophila melanogaster CG9485-PA,
           isoform A protein.
          Length = 1542

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -2

Query: 316 NYFFNFIIFREMLKNY--NCRFKSIK*VIHPQYKRLFRTRLMNNTKAIVIF 170
           N F + +  RE  KN    CRF+ I+ +  PQY+RL  T  +N   A+ IF
Sbjct: 335 NEFMSQVRTREPPKNVANECRFQEIQLIQDPQYRRLAST--INFELALEIF 383


>AE013599-3184|AAF46713.3| 1546|Drosophila melanogaster CG9485-PC,
           isoform C protein.
          Length = 1546

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -2

Query: 316 NYFFNFIIFREMLKNY--NCRFKSIK*VIHPQYKRLFRTRLMNNTKAIVIF 170
           N F + +  RE  KN    CRF+ I+ +  PQY+RL  T  +N   A+ IF
Sbjct: 339 NEFMSQVRTREPPKNVANECRFQEIQLIQDPQYRRLAST--INFELALEIF 387


>AE013599-3183|AAM70868.2| 1629|Drosophila melanogaster CG9485-PB,
           isoform B protein.
          Length = 1629

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -2

Query: 316 NYFFNFIIFREMLKNY--NCRFKSIK*VIHPQYKRLFRTRLMNNTKAIVIF 170
           N F + +  RE  KN    CRF+ I+ +  PQY+RL  T  +N   A+ IF
Sbjct: 422 NEFMSQVRTREPPKNVANECRFQEIQLIQDPQYRRLAST--INFELALEIF 470


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,565,412
Number of Sequences: 53049
Number of extensions: 525387
Number of successful extensions: 685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)