Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1432
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical...    29   4.3  
Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical p...    28   5.7  

>AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.2 protein.
          Length = 1140

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -2

Query: 160 CFFFKQKTHFSCRIMYT*FSLTNLSYLLEFFYFQTFIYYYKEKSVIYRRL 11
           C   ++K     R+M+   S+ ++ +L+ FF FQ   ++Y +    + R+
Sbjct: 61  CISKREKCVNLKRLMFERLSINDILFLIPFFNFQVLQFWYSDTKDRFERI 110


>Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical
           protein F11E6.11 protein.
          Length = 201

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = -1

Query: 164 LVFFFQTENSFF----LPHHVYII*SNKFVISFRVLLLSNIYILLQRKISYISTLER 6
           ++ FF++ + FF    +P   Y++    FV+SF +LLLS   I+    I+  + L+R
Sbjct: 138 IIGFFRSFSVFFNGSIMPDCSYLVIWPTFVLSFLILLLSIFVIIYYSCIACCTILDR 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,360,909
Number of Sequences: 27780
Number of extensions: 320149
Number of successful extensions: 653
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)