Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1430
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    29   0.76 
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.1  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   5.3  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    25   7.1  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    25   9.3  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 22  QSQPHLPAVHPADQRTRLWQPSPSPSVLSYP 114
           QS    P + P    T  + PSPSP+  SYP
Sbjct: 307 QSSASHPVLQPPAPSTLQFNPSPSPAAPSYP 337


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 445 LEFYKCSGPIYILVCFPLKCYFHLQYVLCK 534
           LE ++  G I+ LVC+PL C      VLC+
Sbjct: 17  LERFQWRGAIF-LVCYPLYCVVCFVSVLCR 45


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 55  ADQRTRLWQPSPSPSVLSYPNSTISYTS 138
           A Q +RL  P P PS  S P  TIS  S
Sbjct: 173 AKQLSRLPTPLPPPSSSSLPTGTISTNS 200


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 161 KRQYAPNDTQYIVVSGPSYIAATYGWLRLTKLLRSY 268
           K++  P    + +VS P+Y   + GWL    L +S+
Sbjct: 217 KKRVIPTGYGFNLVSFPNYFFESLGWLFFALLTKSW 252


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 176 PNDTQYIVVSGPSYIAATYGWLRLTKLLRSYYHNHQI 286
           PN+ +   VSG         W+   KL + Y  +H+I
Sbjct: 8   PNNVRVYTVSGEGVTQRLPNWISKRKLKKDYALSHRI 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,627
Number of Sequences: 5004
Number of extensions: 54388
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)