Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1430
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0464 + 3597568-3600244,3600345-3600742                           32   0.45 
02_05_0584 - 30135768-30135790,30136104-30136866                       29   3.2  
11_04_0258 + 15489733-15490054,15490150-15490339,15490438-154909...    28   5.5  
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816...    28   5.5  
04_03_0118 - 11474060-11475298                                         28   7.3  
12_01_0910 + 8858443-8859414                                           27   9.7  
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    27   9.7  

>11_01_0464 + 3597568-3600244,3600345-3600742
          Length = 1024

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = +2

Query: 236 WLRLTKLLRSYYHNHQIMTVYAHIGKI*GPGSVLS--TKVKMLILRILPI*KFIGAVNSW 409
           W RL   L + + NH     Y H+G+    G   S  T +  L++  L   +F G +  W
Sbjct: 351 WNRLEGRLPNSFGNHSFQLQYVHMGQNQLSGQFPSGLTNLHNLVVIELSGNRFSGVLPDW 410

Query: 410 SEAVCSIS--TIQTLNFTNVLVLSTF 481
             A+ S+   T+   NFT ++  S F
Sbjct: 411 LGALKSLQKLTVGDNNFTGLIPSSLF 436


>02_05_0584 - 30135768-30135790,30136104-30136866
          Length = 261

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +3

Query: 9   PII*PKPTSPARGAPCRPTNEALATFPFPFCSLLP 113
           P+  P P SPA GAP  P++ + + FPFP  S LP
Sbjct: 100 PLPLPAPGSPAAGAP--PSSGS-SGFPFPMPSPLP 131


>11_04_0258 +
           15489733-15490054,15490150-15490339,15490438-15490910,
           15501203-15501513
          Length = 431

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 16  SSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYTSL 141
           SSQ  P  PA HP+ Q T L +   +P   S  +  I  ++L
Sbjct: 248 SSQEMPTSPATHPSTQHTALTKRHSTPPASSDVDRPIGGSAL 289


>06_03_1303 +
           29180837-29181205,29181289-29181306,29181337-29181622,
           29185008-29186284,29186499-29187005
          Length = 818

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 61  QRTRLWQPSPSPSVLSYPNSTISYTSLILLDVSEATVCAE*YSI 192
           +R R+  PSPSPS    P+ + S T+      S  T  +  YSI
Sbjct: 522 ERKRVRAPSPSPSPSPSPSPSASATTPTQTGTSTTTTTSSMYSI 565


>04_03_0118 - 11474060-11475298
          Length = 412

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +1

Query: 28  QPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYTSLILL 150
           QPH P  H        W+ S +P V  YP   +   + + L
Sbjct: 109 QPHPPWGHSMKDEELFWRASMAPRVEEYPYQRVPKVAFLFL 149


>12_01_0910 + 8858443-8859414
          Length = 323

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 19  SQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPN 117
           S   P LP   P       W+P PSP+VL +P+
Sbjct: 3   SPPPPSLPPASPLPLPP--WRPDPSPAVLPWPD 33


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +1

Query: 16   SSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYT 135
            SS   P  PA  P         PS SPS  SY  S++ YT
Sbjct: 1777 SSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYT 1816


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,993,384
Number of Sequences: 37544
Number of extensions: 335597
Number of successful extensions: 938
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)