Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1430
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66567-6|CAA91490.2|  281|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>Z66567-6|CAA91490.2|  281|Caenorhabditis elegans Hypothetical
           protein ZK455.5 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 173 APNDTQYIVVSGPSYIAATYGWLRLTKLLRSYYHNHQIMTV 295
           +PN +  +++     +  TY WL  TK L+  + N  I+T+
Sbjct: 58  SPNSSGLVLILNKHALNMTYNWLCNTKHLKGVHENSYIVTL 98


>U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical
           protein B0495.7 protein.
          Length = 895

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 31  PHLPAVH---PADQRTRLWQPSPSPSVLSYP 114
           P+  A+H   P +Q   LW P PSP VL YP
Sbjct: 714 PYYTAIHELFPPEQS--LWVPVPSPVVLPYP 742


>Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical
           protein F18H3.3b protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 55  ADQRTRLWQPSPSPSVLSYP-NSTISYTSLILLDVSEATVCAE*YSIYCRLGPILHCR 225
           A Q   + Q  P P+ + YP N+T S  SL + D+      A  +  +   GP+L  R
Sbjct: 30  AGQPQAVIQQGPPPTNIGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIR 87


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 55  ADQRTRLWQPSPSPSVLSYP-NSTISYTSLILLDVSEATVCAE*YSIYCRLGPILHCR 225
           A Q   + Q  P P+ + YP N+T S  SL + D+      A  +  +   GP+L  R
Sbjct: 30  AGQPQAVIQQGPPPTNIGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIR 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,810,884
Number of Sequences: 27780
Number of extensions: 305695
Number of successful extensions: 742
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)