Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1430
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17440.2 68414.m02133 transcription initiation factor IID (TF...    30   1.5  
At1g17440.1 68414.m02132 transcription initiation factor IID (TF...    30   1.5  
At4g07521.1 68417.m01171 hypothetical protein                          29   2.6  
At4g32360.1 68417.m04607 NADP adrenodoxin-like ferredoxin reduct...    28   4.6  
At4g32760.1 68417.m04661 VHS domain-containing protein / GAT dom...    27   8.1  
At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein si...    27   8.1  

>At1g17440.2 68414.m02133 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 19  SQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTI 126
           + SQP++ + +P      +    PSPS LS+P+S++
Sbjct: 70  NNSQPNISSPNPTSSNPPIGAQIPSPSPLSHPSSSL 105


>At1g17440.1 68414.m02132 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 19  SQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTI 126
           + SQP++ + +P      +    PSPS LS+P+S++
Sbjct: 70  NNSQPNISSPNPTSSNPPIGAQIPSPSPLSHPSSSL 105


>At4g07521.1 68417.m01171 hypothetical protein
          Length = 223

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 218 IAATYGWLRLTKLLRSYYHNHQIMTVYAHIGK 313
           IA T  W+RLT +  ++YH   +M++   +GK
Sbjct: 50  IATTPVWIRLTNVPVNFYHPSILMSIAGGLGK 81


>At4g32360.1 68417.m04607 NADP adrenodoxin-like ferredoxin reductase
           identical to NADP adrenodoxin-like ferredoxin reductase
           GI:28192433 from [Arabidopsis thaliana]
          Length = 483

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 316 LRSGISPEHESENVNIKNFAHMKIHWSC*FM 408
           +RSG++P+H    + I  F+ +  H  C F+
Sbjct: 62  VRSGVAPDHPETKIAINQFSRVAQHERCSFI 92


>At4g32760.1 68417.m04661 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to hepatocyte
           growth factor-regulated tyrosine kinase substrate HRS
           isoform 2 [Homo sapiens] GI:9022389; contains Pfam
           profiles PF00790: VHS domain, PF03127: GAT domain
          Length = 838

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -2

Query: 311 YQCVRIQS*FDDYDNKILVILLIVTNHTWRQCKMGPRRQYIEYHSAH 171
           ++ VRI     D+  K  +++LI    TW++   GPR +Y +Y++ +
Sbjct: 100 HEMVRIVKKKPDFHVKEKILVLI---DTWQEAFGGPRARYPQYYAGY 143


>At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein
           similar to lysosomal alpha-mannosidase GI:3522867 from
           [Homo sapiens]
          Length = 1019

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 571 MTRTKPLLSLMSTQFLNNF*YSWF 642
           +TRT  ++ LM T F   + YSWF
Sbjct: 279 VTRTNHIMWLMGTDFRYQYAYSWF 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,754,959
Number of Sequences: 28952
Number of extensions: 276356
Number of successful extensions: 655
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)