Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1429
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...    29   0.90 
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    27   2.1  
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    26   6.3  

>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 604 FSGILKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           F  I++   N F+P  +V   G D L  D LG
Sbjct: 259 FKSIIEPTINTFQPSAIVLQCGADSLGYDRLG 290


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 592 FIFDFSGILKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           +I+ F  ++     EF PD+V+ + G D    D +G
Sbjct: 300 YIYAFQRVVMPVAYEFDPDLVIVSCGFDAAAGDHIG 335


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 604 FSGILKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           F  ++      F+P+ V+   GTD L  D LG
Sbjct: 238 FKPVISHIMQWFRPEAVILQCGTDSLAGDRLG 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,268
Number of Sequences: 5004
Number of extensions: 61020
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)