Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1429
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0527 - 21775649-21775743,21775840-21775927,21776150-217762...    46   4e-05
07_01_0457 - 3468419-3468585,3469674-3469842,3470339-3470384,347...    33   0.23 
12_01_0531 + 4194403-4194417,4194776-4194850,4195136-4195237,419...    30   1.6  
01_03_0038 + 11862743-11862884,11863145-11863704,11863733-118637...    30   2.2  
07_03_1174 + 24538522-24538682,24539229-24539430,24539529-245396...    28   6.6  

>06_03_0527 -
           21775649-21775743,21775840-21775927,21776150-21776236,
           21776714-21776764,21776863-21776907,21777260-21777306,
           21777380-21777444,21778301-21778467,21778539-21778607,
           21778695-21778757,21778882-21778999,21779099-21779154,
           21779242-21779349
          Length = 352

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = +1

Query: 616 LKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           LK A + F+P ++VYNAGTDILD DPLG
Sbjct: 262 LKVAESRFQPQLIVYNAGTDILDGDPLG 289


>07_01_0457 -
           3468419-3468585,3469674-3469842,3470339-3470384,
           3470671-3470753,3471395-3471474,3472320-3472428,
           3472667-3472735,3472874-3472924,3473059-3473184,
           3473312-3473435,3473617-3473672,3473790-3473854,
           3474438-3474513,3475050-3475108,3475275-3475365,
           3475490-3475990
          Length = 623

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 592 FIFDFSGILKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           +IF F  ++     EF PDI + +AG D    DPLG
Sbjct: 431 YIFAFKHVVLPIAAEFAPDITIISAGFDAARGDPLG 466


>12_01_0531 +
           4194403-4194417,4194776-4194850,4195136-4195237,
           4195453-4195584,4196137-4196193,4196314-4196565,
           4196664-4196845,4197244-4197544
          Length = 371

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 604 FSGILKAAFNEFKPDIVVYNAGTDILDTDPL 696
           F  ++  A   FKPDI++ +AG D    DPL
Sbjct: 251 FDEVIAPAAQRFKPDIILVSAGYDAHALDPL 281


>01_03_0038 +
           11862743-11862884,11863145-11863704,11863733-11863777,
           11864174-11864563
          Length = 378

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 32  TELKKDKFHRNSCSNHIFLSFHRCLELLHLIYGYIY 139
           T+ +  + HR +CSN +    H CLE     Y Y+Y
Sbjct: 268 TKAQTREQHRFTCSNSVLQILHFCLEFEEGCYVYLY 303


>07_03_1174 +
           24538522-24538682,24539229-24539430,24539529-24539675,
           24539832-24539944,24540580-24540791,24541194-24541258,
           24541581-24541751,24542543-24542887,24542980-24543173,
           24543292-24543448,24543946-24544010,24544166-24544331
          Length = 665

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 592 FIFDFSGILKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           +I  +  +L      F PDIV+ +AG D    DPLG
Sbjct: 250 YIAAWDHVLLPVAEAFNPDIVLVSAGFDAALGDPLG 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,540,699
Number of Sequences: 37544
Number of extensions: 323011
Number of successful extensions: 570
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)