Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1429
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44806| Best HMM Match : Hist_deacetyl (HMM E-Value=0)               30   1.7  
SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   5.1  
SB_12671| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)                      29   5.1  

>SB_44806| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
          Length = 496

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 592 FIFDFSGILKAAFNEFKPDIVVYNAGTDILDTDPLGH 702
           +I  F  IL     EF PDIV+ +AG D    DP G+
Sbjct: 396 YIAAFQQILLPIAYEFDPDIVLVSAGFDSARGDPKGY 432


>SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1310

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 369 FLYIILLYGHVHNMQFTSLHIYIAEVHERR 458
           FL+II+LYG +   QF  L    A V +RR
Sbjct: 238 FLFIIMLYGQLAAKQFAKLRGKAAAVTDRR 267


>SB_12671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 592 FIFDFSGILKAAFNEFKPDIVVYNAGTDILDTDPL 696
           F+  F+ ++     +FKPD +V   G D L  DP+
Sbjct: 247 FVEVFTRVMSRVKAKFKPDAIVCQCGVDSLAGDPM 281


>SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)
          Length = 800

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 369 FLYIILLYGHVHNMQFTSLHIYIAEVHE 452
           FL  + L GH+ N+ + +LH Y+ + HE
Sbjct: 21  FLMALGLNGHLGNLSYMNLHDYLCKGHE 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,424,776
Number of Sequences: 59808
Number of extensions: 408838
Number of successful extensions: 890
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)