Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1429
         (730 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457341-1|CAG33622.1|  225|Homo sapiens HDAC11 protein.               40   0.009
BC009676-1|AAH09676.1|  347|Homo sapiens histone deacetylase 11 ...    40   0.009
AL137362-1|CAB70712.1|  147|Homo sapiens hypothetical protein pr...    40   0.009
AK025890-1|BAB15272.1|  347|Homo sapiens protein ( Homo sapiens ...    40   0.009
AK025426-1|BAB15127.1|  225|Homo sapiens protein ( Homo sapiens ...    40   0.009

>CR457341-1|CAG33622.1|  225|Homo sapiens HDAC11 protein.
          Length = 225

 Score = 39.9 bits (89), Expect = 0.009
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +1

Query: 616 LKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           +K +  E  PD+VVYNAGTDIL+ D LG
Sbjct: 120 IKKSLQEHLPDVVVYNAGTDILEGDRLG 147


>BC009676-1|AAH09676.1|  347|Homo sapiens histone deacetylase 11
           protein.
          Length = 347

 Score = 39.9 bits (89), Expect = 0.009
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +1

Query: 616 LKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           +K +  E  PD+VVYNAGTDIL+ D LG
Sbjct: 242 IKKSLQEHLPDVVVYNAGTDILEGDRLG 269


>AL137362-1|CAB70712.1|  147|Homo sapiens hypothetical protein
           protein.
          Length = 147

 Score = 39.9 bits (89), Expect = 0.009
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +1

Query: 616 LKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           +K +  E  PD+VVYNAGTDIL+ D LG
Sbjct: 42  IKKSLQEHLPDVVVYNAGTDILEGDRLG 69


>AK025890-1|BAB15272.1|  347|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22237 fis, clone HRC02058. ).
          Length = 347

 Score = 39.9 bits (89), Expect = 0.009
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +1

Query: 616 LKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           +K +  E  PD+VVYNAGTDIL+ D LG
Sbjct: 242 IKKSLQEHLPDVVVYNAGTDILEGDRLG 269


>AK025426-1|BAB15127.1|  225|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21773 fis, clone COLF7849. ).
          Length = 225

 Score = 39.9 bits (89), Expect = 0.009
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +1

Query: 616 LKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           +K +  E  PD+VVYNAGTDIL+ D LG
Sbjct: 120 IKKSLQEHLPDVVVYNAGTDILEGDRLG 147


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,705,698
Number of Sequences: 237096
Number of extensions: 1957843
Number of successful extensions: 3488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3488
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)