Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1429
(730 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61954-3|AAK29809.1| 863|Caenorhabditis elegans Hypothetical pr... 29 4.5
U61954-2|ABS19469.1| 957|Caenorhabditis elegans Hypothetical pr... 29 4.5
U61954-1|AAK29810.1| 955|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z71185-9|CAA94910.2| 282|Caenorhabditis elegans Hypothetical pr... 28 5.9
U70858-9|AAB09181.2| 300|Caenorhabditis elegans Serpentine rece... 28 5.9
AY077615-1|AAL79359.1| 510|Caenorhabditis elegans KSR-2b protein. 28 7.9
AY077614-1|AAL79358.1| 550|Caenorhabditis elegans KSR-2a protein. 28 7.9
AL137227-5|CAB70240.2| 510|Caenorhabditis elegans Hypothetical ... 28 7.9
AL137227-4|CAB70239.2| 550|Caenorhabditis elegans Hypothetical ... 28 7.9
>U61954-3|AAK29809.1| 863|Caenorhabditis elegans Hypothetical
protein F41H10.6a protein.
Length = 863
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 604 FSGILKAAFNEFKPDIVVYNAGTDILDTDPLG 699
F ++ +F PD+V+ +AG D DPLG
Sbjct: 668 FQRVIMPIAYQFNPDLVLISAGFDAAVDDPLG 699
>U61954-2|ABS19469.1| 957|Caenorhabditis elegans Hypothetical
protein F41H10.6c protein.
Length = 957
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 604 FSGILKAAFNEFKPDIVVYNAGTDILDTDPLG 699
F ++ +F PD+V+ +AG D DPLG
Sbjct: 670 FQRVIMPIAYQFNPDLVLISAGFDAAVDDPLG 701
>U61954-1|AAK29810.1| 955|Caenorhabditis elegans Hypothetical
protein F41H10.6b protein.
Length = 955
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 604 FSGILKAAFNEFKPDIVVYNAGTDILDTDPLG 699
F ++ +F PD+V+ +AG D DPLG
Sbjct: 668 FQRVIMPIAYQFNPDLVLISAGFDAAVDDPLG 699
>Z71185-9|CAA94910.2| 282|Caenorhabditis elegans Hypothetical
protein C35A5.9 protein.
Length = 282
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 646 DIVVYNAGTDILDTDPLG 699
D +++NAGTD L DPLG
Sbjct: 206 DFIMFNAGTDCLLGDPLG 223
>U70858-9|AAB09181.2| 300|Caenorhabditis elegans Serpentine
receptor, class x protein36 protein.
Length = 300
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Frame = +3
Query: 189 LKIEKFIV--IIKLNTKNI*T--L*IIHLKIEKSTIKGFLLPIFHKSL-HG*DQILYLSV 353
+ IE++++ II +N I T L + + + K+ F L ++++ +G ++YL
Sbjct: 1 MHIEQWLILAIIPVNMIGIVTNWLVVTAIILNKTVNHSFSLLTSNQAIFNGVFSVVYLVY 60
Query: 354 SVPMSFLYIILLYGHVHNMQFTSLHIYIAEVH 449
VPM F + +VH++ F L Y A +H
Sbjct: 61 VVPMIFFDSSFMKLNVHHVAFILLICYDASIH 92
>AY077615-1|AAL79359.1| 510|Caenorhabditis elegans KSR-2b protein.
Length = 510
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/68 (22%), Positives = 32/68 (47%)
Frame = +3
Query: 294 LLPIFHKSLHG*DQILYLSVSVPMSFLYIILLYGHVHNMQFTSLHIYIAEVHERR*PLTI 473
++ + S H + Y VS P++ Y I+ + HN + +H ++E ++ I
Sbjct: 255 IVSAYKNSRHDHIALFYGYVSDPVTNTYAIVTNFYQHNTLYHRIHEQLSEDFDQSWTFQI 314
Query: 474 RLAVCSSV 497
L +C ++
Sbjct: 315 SLQICQAM 322
>AY077614-1|AAL79358.1| 550|Caenorhabditis elegans KSR-2a protein.
Length = 550
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/68 (22%), Positives = 32/68 (47%)
Frame = +3
Query: 294 LLPIFHKSLHG*DQILYLSVSVPMSFLYIILLYGHVHNMQFTSLHIYIAEVHERR*PLTI 473
++ + S H + Y VS P++ Y I+ + HN + +H ++E ++ I
Sbjct: 295 IVSAYKNSRHDHIALFYGYVSDPVTNTYAIVTNFYQHNTLYHRIHEQLSEDFDQSWTFQI 354
Query: 474 RLAVCSSV 497
L +C ++
Sbjct: 355 SLQICQAM 362
>AL137227-5|CAB70240.2| 510|Caenorhabditis elegans Hypothetical
protein F58D5.4b protein.
Length = 510
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/68 (22%), Positives = 32/68 (47%)
Frame = +3
Query: 294 LLPIFHKSLHG*DQILYLSVSVPMSFLYIILLYGHVHNMQFTSLHIYIAEVHERR*PLTI 473
++ + S H + Y VS P++ Y I+ + HN + +H ++E ++ I
Sbjct: 255 IVSAYKNSRHDHIALFYGYVSDPVTNTYAIVTNFYQHNTLYHRIHEQLSEDFDQSWTFQI 314
Query: 474 RLAVCSSV 497
L +C ++
Sbjct: 315 SLQICQAM 322
>AL137227-4|CAB70239.2| 550|Caenorhabditis elegans Hypothetical
protein F58D5.4a protein.
Length = 550
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/68 (22%), Positives = 32/68 (47%)
Frame = +3
Query: 294 LLPIFHKSLHG*DQILYLSVSVPMSFLYIILLYGHVHNMQFTSLHIYIAEVHERR*PLTI 473
++ + S H + Y VS P++ Y I+ + HN + +H ++E ++ I
Sbjct: 295 IVSAYKNSRHDHIALFYGYVSDPVTNTYAIVTNFYQHNTLYHRIHEQLSEDFDQSWTFQI 354
Query: 474 RLAVCSSV 497
L +C ++
Sbjct: 355 SLQICQAM 362
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,567,156
Number of Sequences: 27780
Number of extensions: 339741
Number of successful extensions: 816
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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