Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1429
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26040.2 68418.m03099 histone deacetylase family protein (HDA...    45   6e-05
At5g26040.1 68418.m03098 histone deacetylase family protein (HDA...    45   6e-05
At3g18520.2 68416.m02354 histone deacetylase family protein simi...    32   0.34 
At3g18520.1 68416.m02353 histone deacetylase family protein simi...    32   0.34 
At5g61070.1 68418.m07663 histone deacetylase family protein (HDA...    32   0.45 
At5g61060.1 68418.m07662 histone deacetylase family protein simi...    29   2.4  
At4g33470.1 68417.m04754 histone deacetylase family protein simi...    29   4.2  
At3g01260.1 68416.m00032 aldose 1-epimerase family protein simil...    28   5.5  
At5g54610.1 68418.m06800 ankyrin repeat family protein contains ...    27   9.6  

>At5g26040.2 68418.m03099 histone deacetylase family protein (HDA2)
           identical to HDA2 [Arabidopsis thaliana] GI:21105771;
           similar to SP|Q96DB2 Histone deacetylase 11 (HD11) {Homo
           sapiens}; contains Pfam profile PF00850: Histone
           deacetylase family
          Length = 387

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 18/28 (64%), Positives = 23/28 (82%)
 Frame = +1

Query: 616 LKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           L+ A   F+P++V+YNAGTDILD DPLG
Sbjct: 299 LEVASRNFQPELVIYNAGTDILDGDPLG 326


>At5g26040.1 68418.m03098 histone deacetylase family protein (HDA2)
           identical to HDA2 [Arabidopsis thaliana] GI:21105771;
           similar to SP|Q96DB2 Histone deacetylase 11 (HD11) {Homo
           sapiens}; contains Pfam profile PF00850: Histone
           deacetylase family
          Length = 359

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 18/28 (64%), Positives = 23/28 (82%)
 Frame = +1

Query: 616 LKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           L+ A   F+P++V+YNAGTDILD DPLG
Sbjct: 271 LEVASRNFQPELVIYNAGTDILDGDPLG 298


>At3g18520.2 68416.m02354 histone deacetylase family protein similar
           to SP|P53973 Histone deacetylase HDA1 {Saccharomyces
           cerevisiae}; contains Pfam profile PF00850: Histone
           deacetylase family; AT-acceptor splice site at intron 7
          Length = 556

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 592 FIFDFSGILKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           +IF F  ++    + F PD V+ +AG D    DPLG
Sbjct: 381 YIFAFQHVVLPIASAFSPDFVIISAGFDAARGDPLG 416


>At3g18520.1 68416.m02353 histone deacetylase family protein similar
           to SP|P53973 Histone deacetylase HDA1 {Saccharomyces
           cerevisiae}; contains Pfam profile PF00850: Histone
           deacetylase family; AT-acceptor splice site at intron 7
          Length = 552

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 592 FIFDFSGILKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           +IF F  ++    + F PD V+ +AG D    DPLG
Sbjct: 377 YIFAFQHVVLPIASAFSPDFVIISAGFDAARGDPLG 412


>At5g61070.1 68418.m07663 histone deacetylase family protein (HDA18)
           identical to HDA18 [Arabidopsis thaliana] GI:21105769;
           similar to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo
           sapiens}; contains Pfam profile PF00850: Histone
           deacetylase family
          Length = 682

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 613 ILKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           IL     EFKPDI++ +AG D    DPLG
Sbjct: 304 ILIPVTKEFKPDIILLSAGFDAAIGDPLG 332


>At5g61060.1 68418.m07662 histone deacetylase family protein similar
           to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo sapiens};
           contains Pfam profile PF00850: Histone deacetylase
           family
          Length = 660

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 613 ILKAAFNEFKPDIVVYNAGTDILDTDPLG 699
           IL     EF PD++  +AG D    DPLG
Sbjct: 271 ILIPVAREFNPDVIFLSAGFDAAINDPLG 299


>At4g33470.1 68417.m04754 histone deacetylase family protein similar
           to histone deacetylase 10 isoform alpha [Homo sapiens]
           GI:15213865; contains Pfam profile PF00850: Histone
           deacetylase family
          Length = 423

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 604 FSGILKAAFNEFKPDIVVYNAGTDILDTDPLGH 702
           F  I+      FKPDI++ +AG D    DPL +
Sbjct: 303 FEEIIVPCAQRFKPDIILVSAGYDAHVLDPLAN 335


>At3g01260.1 68416.m00032 aldose 1-epimerase family protein similar
           to non-cell-autonomous protein pathway2, plasmodesmal
           receptor [Nicotiana tabacum] GI:15824567; contains Pfam
           profile PF01263: Aldose 1-epimerase
          Length = 378

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -3

Query: 725 YPTFTYAQCPKGSVSKISVPALYTTISGLNSLKAAFKIPEKSK 597
           Y  FTY   P G   K+ V   Y  + G N LK   +   K K
Sbjct: 172 YIVFTYTTSPDGDQGKLEVTVTYKLV-GENRLKMVMQAKAKEK 213


>At5g54610.1 68418.m06800 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 426

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 342 YLSVSVPMSFLYIILLYGHVHNMQFTSLHIY 434
           Y  ++VP+ F Y +L+Y  +H + F  L IY
Sbjct: 357 YFIITVPLVFSYFLLMY-MMHGLSFFFLIIY 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,060,970
Number of Sequences: 28952
Number of extensions: 291691
Number of successful extensions: 515
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)