Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1428
         (743 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   0.84 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   6.0  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   6.0  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 180 CGSPPRLKEK*QTFIKIKYLSKISWRET 263
           C SPP   E  + F +I+Y+S I  R +
Sbjct: 372 CESPPAADELLRRFHEIRYMSTIDLRSS 399


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 552 LLKPKPDLIEHYPNKKIKKIYL 617
           +   +P LIE +  +KI++IYL
Sbjct: 464 IFSERPALIEGWKVEKIQEIYL 485


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 644 QIEPVFVLSEVYLFDLLIGIM 582
           Q   VF+   V+LF L +GI+
Sbjct: 146 QNSDVFIFDNVWLFILWVGIL 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,244
Number of Sequences: 336
Number of extensions: 3391
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)