Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1428
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   3.7  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    26   4.9  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   8.6  

>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = -2

Query: 700 YISQSLVSVFCFTLWFWFFK*NPFSS*ARYIFLIFLLG*CSMRSGFGFSNFPFRGMCLG 524
           Y+  S VS     LWFW    + +S   + +FLIF+ G        G  NF  R   LG
Sbjct: 707 YLCHSFVSKRKIILWFWDLI-SHYSLKMQKLFLIFVTG-SDRIPATGAHNFQLRISVLG 763


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 262 VSRHEIFERYFIFIKVCYFSFRRGGEPHRHHYKRCQGHYSGH 137
           V+R +I + +F  +   YF+           YK C GH SGH
Sbjct: 200 VTRFQIVQ-FFADLGFIYFAVYTEVAYRLKFYKACMGHCSGH 240


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 93  HFTDAMMLATPAARPNTLSKLG 28
           H+TD M  A P  RPN L + G
Sbjct: 160 HYTDNMYHAKPVNRPNFLPREG 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,857
Number of Sequences: 5004
Number of extensions: 56729
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)