Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1428
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    33   0.24 
06_03_0868 - 25544933-25544938,25544939-25545142,25545494-255457...    31   1.3  
06_03_1495 + 30566992-30567084,30567181-30567235,30567320-30567507     29   3.9  
02_02_0681 + 12892728-12893850,12894411-12894529                       29   5.2  
12_02_0413 - 18803875-18803938,18804009-18804787                       28   6.8  
07_03_1226 - 24998276-24998375,24998728-24998849,24998936-249997...    28   9.0  
01_06_0746 - 31636024-31641396                                         28   9.0  

>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -3

Query: 204  PSDVEANHTATITNDAKDTTVDITEAMNSQVMLWSMYHFT-DAMMLATPAARPNTLS--K 34
            PSD+  +  +T  +D +DT   +T   +  V +W M H+T D    +   + P+TL    
Sbjct: 3466 PSDLILSVASTTNSDWQDTNWYVTGHQSGAVKVWKMVHYTSDEAANSKSKSPPSTLGGMS 3525

Query: 33   LGASTSMYPL 4
            L   T  Y L
Sbjct: 3526 LNGQTQEYRL 3535


>06_03_0868 -
           25544933-25544938,25544939-25545142,25545494-25545751,
           25546625-25546906
          Length = 249

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/65 (35%), Positives = 31/65 (47%)
 Frame = +1

Query: 352 FTTGVLSINILIAAFLEVLWSILSVKISYRGMRNNYKDDSSEPRGKCISVVTR*KETILN 531
           FT    SI I +AAF+ V W+   +++S R  R   K   + PR     VV   K  I+ 
Sbjct: 142 FTFFATSIGI-VAAFISVFWAFGYIRLSQRLKRTANKPAKAPPRA---DVVKNLKNGIVL 197

Query: 532 TSLGM 546
             LGM
Sbjct: 198 NVLGM 202


>06_03_1495 + 30566992-30567084,30567181-30567235,30567320-30567507
          Length = 111

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 541 RGMCLGSFPFIW*QQICTFLLARCCRLCNC 452
           +G C G     W +++C  +   CC  CNC
Sbjct: 52  QGTCSGRCANNWKKEMCNKMCNVCCNRCNC 81


>02_02_0681 + 12892728-12893850,12894411-12894529
          Length = 413

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 25  GAELAQRVRPGGGRRQHHGVREVVHRPQHHLA-IHSLGYVHCSVLG 159
           G  LA  ++  GGR +   +R  V      LA +H+ G  HC V G
Sbjct: 90  GGSLADEIKRCGGRCEEPLIRSRVGDVLRGLAYVHAAGIAHCDVKG 135


>12_02_0413 - 18803875-18803938,18804009-18804787
          Length = 280

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 31  ELAQRVRPGGGRRQHHGVREVV 96
           EL + +RPGGG +QH  V  +V
Sbjct: 161 ELVRELRPGGGEQQHFKVVSIV 182


>07_03_1226 -
           24998276-24998375,24998728-24998849,24998936-24999702,
           25000447-25000618
          Length = 386

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 16  AGAGAELAQRVRPGGGRRQHHGVREV-VHRPQHHLAIHSLGYVH 144
           AGAGA L  + R  G  R+HHG   + V R  H    H    VH
Sbjct: 170 AGAGAALPPQRRRRGRGRRHHGELVLRVQRAPHLRREHGAERVH 213


>01_06_0746 - 31636024-31641396
          Length = 1790

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 32   SLLSVFGLAAGVASIMASVKWYIDHNITWLFIASVMSTV-VSLASFVMVAVWFASTSEG 205
            SLL+      G+ SI   ++ +I+  + W  + SV     + L  FVM  V F S   G
Sbjct: 1700 SLLAFIPTGWGLISIAQVIRPFIESTVVWASVVSVARLYEILLGVFVMAPVAFFSWLPG 1758


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,709,820
Number of Sequences: 37544
Number of extensions: 387121
Number of successful extensions: 1154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)