BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1428 (743 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 33 0.24 06_03_0868 - 25544933-25544938,25544939-25545142,25545494-255457... 31 1.3 06_03_1495 + 30566992-30567084,30567181-30567235,30567320-30567507 29 3.9 02_02_0681 + 12892728-12893850,12894411-12894529 29 5.2 12_02_0413 - 18803875-18803938,18804009-18804787 28 6.8 07_03_1226 - 24998276-24998375,24998728-24998849,24998936-249997... 28 9.0 01_06_0746 - 31636024-31641396 28 9.0 >03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393, 30366541-30366849,30367544-30370567,30370640-30372290, 30372373-30373463,30373544-30373646,30373737-30374439, 30374654-30375783,30375913-30376027,30376504-30376695, 30377443-30377616,30378438-30378494,30378581-30378716, 30378842-30378927,30379023-30379092,30379993-30380021, 30380444-30380456,30380762-30381006 Length = 3582 Score = 33.1 bits (72), Expect = 0.24 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Frame = -3 Query: 204 PSDVEANHTATITNDAKDTTVDITEAMNSQVMLWSMYHFT-DAMMLATPAARPNTLS--K 34 PSD+ + +T +D +DT +T + V +W M H+T D + + P+TL Sbjct: 3466 PSDLILSVASTTNSDWQDTNWYVTGHQSGAVKVWKMVHYTSDEAANSKSKSPPSTLGGMS 3525 Query: 33 LGASTSMYPL 4 L T Y L Sbjct: 3526 LNGQTQEYRL 3535 >06_03_0868 - 25544933-25544938,25544939-25545142,25545494-25545751, 25546625-25546906 Length = 249 Score = 30.7 bits (66), Expect = 1.3 Identities = 23/65 (35%), Positives = 31/65 (47%) Frame = +1 Query: 352 FTTGVLSINILIAAFLEVLWSILSVKISYRGMRNNYKDDSSEPRGKCISVVTR*KETILN 531 FT SI I +AAF+ V W+ +++S R R K + PR VV K I+ Sbjct: 142 FTFFATSIGI-VAAFISVFWAFGYIRLSQRLKRTANKPAKAPPRA---DVVKNLKNGIVL 197 Query: 532 TSLGM 546 LGM Sbjct: 198 NVLGM 202 >06_03_1495 + 30566992-30567084,30567181-30567235,30567320-30567507 Length = 111 Score = 29.1 bits (62), Expect = 3.9 Identities = 10/30 (33%), Positives = 15/30 (50%) Frame = -2 Query: 541 RGMCLGSFPFIW*QQICTFLLARCCRLCNC 452 +G C G W +++C + CC CNC Sbjct: 52 QGTCSGRCANNWKKEMCNKMCNVCCNRCNC 81 >02_02_0681 + 12892728-12893850,12894411-12894529 Length = 413 Score = 28.7 bits (61), Expect = 5.2 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = +1 Query: 25 GAELAQRVRPGGGRRQHHGVREVVHRPQHHLA-IHSLGYVHCSVLG 159 G LA ++ GGR + +R V LA +H+ G HC V G Sbjct: 90 GGSLADEIKRCGGRCEEPLIRSRVGDVLRGLAYVHAAGIAHCDVKG 135 >12_02_0413 - 18803875-18803938,18804009-18804787 Length = 280 Score = 28.3 bits (60), Expect = 6.8 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +1 Query: 31 ELAQRVRPGGGRRQHHGVREVV 96 EL + +RPGGG +QH V +V Sbjct: 161 ELVRELRPGGGEQQHFKVVSIV 182 >07_03_1226 - 24998276-24998375,24998728-24998849,24998936-24999702, 25000447-25000618 Length = 386 Score = 27.9 bits (59), Expect = 9.0 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Frame = +1 Query: 16 AGAGAELAQRVRPGGGRRQHHGVREV-VHRPQHHLAIHSLGYVH 144 AGAGA L + R G R+HHG + V R H H VH Sbjct: 170 AGAGAALPPQRRRRGRGRRHHGELVLRVQRAPHLRREHGAERVH 213 >01_06_0746 - 31636024-31641396 Length = 1790 Score = 27.9 bits (59), Expect = 9.0 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Frame = +2 Query: 32 SLLSVFGLAAGVASIMASVKWYIDHNITWLFIASVMSTV-VSLASFVMVAVWFASTSEG 205 SLL+ G+ SI ++ +I+ + W + SV + L FVM V F S G Sbjct: 1700 SLLAFIPTGWGLISIAQVIRPFIESTVVWASVVSVARLYEILLGVFVMAPVAFFSWLPG 1758 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,709,820 Number of Sequences: 37544 Number of extensions: 387121 Number of successful extensions: 1154 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1153 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1968901276 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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