Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1428
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)                     31   0.75 
SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05)                 30   2.3  
SB_32608| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_15179| Best HMM Match : S-antigen (HMM E-Value=2.4)                 28   7.0  
SB_13989| Best HMM Match : Myb_DNA-binding (HMM E-Value=9.6e-24)       28   9.2  
SB_49477| Best HMM Match : Extensin_2 (HMM E-Value=4.1)                28   9.2  
SB_25433| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)
          Length = 1362

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +2

Query: 8   GYMLVLAPSLLSVFGLAAGVASIMASV----KWYIDHNITWLFIASVMSTVVSLASFVMV 175
           G +L     L ++  L + +A +++ V    K++ DHN  W   A     + SL   +  
Sbjct: 48  GKILPFTALLWTIVSLVSHIADVLSDVYVSGKYFFDHNYWWSGFALGFVVIASLVIQIFS 107

Query: 176 AVWF 187
           A WF
Sbjct: 108 AKWF 111


>SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05)
          Length = 514

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 101 DHNITWLFIASVMSTVVSLASFVMVAVWFASTSEGEI 211
           +H  T+LF+ +V+ T+VS  + VM      +T EG++
Sbjct: 210 NHVFTYLFVVTVVGTLVSAPTHVMADTATLTTLEGQL 246


>SB_32608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 443 ACETITKTTAASQEESAYLLSPDKRKRS*THPSEWKIAETKTGPHRT 583
           A E+    +++S  ES       +RK++ TH S+   A T T P+RT
Sbjct: 499 ASESSDSQSSSSSHESDVDRRRRRRKQARTHESDSTCASTNTEPNRT 545


>SB_15179| Best HMM Match : S-antigen (HMM E-Value=2.4)
          Length = 199

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 443 ACETITKTTAASQEESAYLLSPDKRKRS*THPSEWKIAETKTGPHRT 583
           A E+    +++S  ES       +RK++ TH S+   A T T P+RT
Sbjct: 49  ASESSDSQSSSSSNESDVDRRRRRRKQARTHESDSTCASTNTEPNRT 95


>SB_13989| Best HMM Match : Myb_DNA-binding (HMM E-Value=9.6e-24)
          Length = 478

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 513 KGNDPKHIPRNGKLLKPKPDLIEHYPNKKIKKIYLAQ 623
           K N+P H+ +  KL+ PKP + +    + +K  Y ++
Sbjct: 267 KMNNPDHVKKRSKLVLPKPQISDGELEEIVKMGYASE 303


>SB_49477| Best HMM Match : Extensin_2 (HMM E-Value=4.1)
          Length = 346

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 513 KGNDPKHIPRNGKLLKPKPDLIEHYPNKKIKKIYLAQDENG 635
           K ND      + ++   +P+ +E  PN K + +Y+  +ENG
Sbjct: 186 KKNDQPVRKVHHQITYAQPEFVEDSPNPKSRNVYVYLEENG 226


>SB_25433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
 Frame = +2

Query: 332 RVKDHECSRREYXXXXXXXXXXXKCFGRS*ASRYHIEACETITKTTAASQEESAYLLSPD 511
           RVKD EC  R+Y           +C+ R   S +   A  +I      +Q+ + Y  S  
Sbjct: 33  RVKDTECVGRDY-TNFVYRIAVTRCYNRGKPSTFGERAPSSILSRVVRAQKRTEYPASVF 91

Query: 512 KRKRS*THPSEWKIAETKTGP-HRTLSQ*EDQK 607
                  +P E + ++ K  P HRT S   D K
Sbjct: 92  A-----PYPQEPRGSKYKMAPVHRTESVFRDDK 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,427,766
Number of Sequences: 59808
Number of extensions: 441527
Number of successful extensions: 1413
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)