BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1428 (743 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr... 31 1.1 U13019-13|AAC24450.1| 336|Caenorhabditis elegans Serpentine rec... 30 1.5 Z68014-1|CAA92023.1| 335|Caenorhabditis elegans Hypothetical pr... 29 3.5 Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical pr... 28 6.1 >U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical protein ZK430.5 protein. Length = 1276 Score = 30.7 bits (66), Expect = 1.1 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Frame = +2 Query: 449 ETITKTTAASQEESAYLLSPDKRKRS*THPSEWKIAET-----KTGPHRTLSQ*EDQKDI 613 ET++KT S +L+ + P + I ET K PH T SQ E++KD Sbjct: 1173 ETVSKTPKQKSLASNQILTLRSETMNQEVPRK-AITETRSKVQKAPPHPTASQNEEEKDN 1231 Query: 614 PRSRRKRVLFEEPKPQSEAKHG 679 + RKR L P +HG Sbjct: 1232 LKRTRKRKLLVSTIPNFCKEHG 1253 >U13019-13|AAC24450.1| 336|Caenorhabditis elegans Serpentine receptor, class g (gamma)protein 9 protein. Length = 336 Score = 30.3 bits (65), Expect = 1.5 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +2 Query: 77 MASVKWYIDHNITWLFIASVMSTVVSLASFVMV 175 M+SV W +DHN W S + VSL+ F+++ Sbjct: 135 MSSVIWPVDHNKVWSKNLSFIVAFVSLSPFLII 167 >Z68014-1|CAA92023.1| 335|Caenorhabditis elegans Hypothetical protein W04G3.1 protein. Length = 335 Score = 29.1 bits (62), Expect = 3.5 Identities = 11/30 (36%), Positives = 21/30 (70%) Frame = +1 Query: 325 SEESQGSRVFTTGVLSINILIAAFLEVLWS 414 S++ Q S +FTT ++I ++ FL+++WS Sbjct: 21 SQQLQQSLLFTTYTVNILVVTGVFLKIMWS 50 >Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical protein C17G1.8 protein. Length = 291 Score = 28.3 bits (60), Expect = 6.1 Identities = 18/58 (31%), Positives = 26/58 (44%) Frame = +1 Query: 271 VYEHNSSHVIVALNSTKVSEESQGSRVFTTGVLSINILIAAFLEVLWSILSVKISYRG 444 V+ ++S + + L T S S TGV I+ +L V WS S+ SY G Sbjct: 26 VWLYSSKNNFIELTPTSYSALSAAGLCVFTGVTIFIIVAVGYLGVSWSNKSLLYSYIG 83 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,652,291 Number of Sequences: 27780 Number of extensions: 327276 Number of successful extensions: 1081 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1017 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1081 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1756472266 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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