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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1428
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U13019-13|AAC24450.1|  336|Caenorhabditis elegans Serpentine rec...    30   1.5  
Z68014-1|CAA92023.1|  335|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical protein
            ZK430.5 protein.
          Length = 1276

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
 Frame = +2

Query: 449  ETITKTTAASQEESAYLLSPDKRKRS*THPSEWKIAET-----KTGPHRTLSQ*EDQKDI 613
            ET++KT       S  +L+      +   P +  I ET     K  PH T SQ E++KD 
Sbjct: 1173 ETVSKTPKQKSLASNQILTLRSETMNQEVPRK-AITETRSKVQKAPPHPTASQNEEEKDN 1231

Query: 614  PRSRRKRVLFEEPKPQSEAKHG 679
             +  RKR L     P    +HG
Sbjct: 1232 LKRTRKRKLLVSTIPNFCKEHG 1253


>U13019-13|AAC24450.1|  336|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 9 protein.
          Length = 336

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 77  MASVKWYIDHNITWLFIASVMSTVVSLASFVMV 175
           M+SV W +DHN  W    S +   VSL+ F+++
Sbjct: 135 MSSVIWPVDHNKVWSKNLSFIVAFVSLSPFLII 167


>Z68014-1|CAA92023.1|  335|Caenorhabditis elegans Hypothetical
           protein W04G3.1 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 325 SEESQGSRVFTTGVLSINILIAAFLEVLWS 414
           S++ Q S +FTT  ++I ++   FL+++WS
Sbjct: 21  SQQLQQSLLFTTYTVNILVVTGVFLKIMWS 50


>Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical
           protein C17G1.8 protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 271 VYEHNSSHVIVALNSTKVSEESQGSRVFTTGVLSINILIAAFLEVLWSILSVKISYRG 444
           V+ ++S +  + L  T  S  S       TGV    I+   +L V WS  S+  SY G
Sbjct: 26  VWLYSSKNNFIELTPTSYSALSAAGLCVFTGVTIFIIVAVGYLGVSWSNKSLLYSYIG 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,652,291
Number of Sequences: 27780
Number of extensions: 327276
Number of successful extensions: 1081
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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