Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1428
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    29   0.046
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.0  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   4.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   5.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.3  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   7.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.2  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 0.046
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +1

Query: 268 DVYEHNSSHVIVALNSTKVSEESQGSRVFTTGVLSINILI 387
           D+Y +N+   IV ++ ++ + +S+    FTT +LS NIL+
Sbjct: 200 DMYNNNTEWEIVHMSHSESTIDSKFGLGFTTDLLSYNILL 239


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/65 (24%), Positives = 24/65 (36%)
 Frame = +3

Query: 492 HICCHQIKGNDPKHIPRNGKLLKPKPDLIEHYPNKKIKKIYLAQDENGFYLKNQNHKVKQ 671
           H+  H  +G DP      GK       L  HY     +K Y  +  +  +   +N  V +
Sbjct: 80  HLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHR 139

Query: 672 NTETK 686
              TK
Sbjct: 140 RIHTK 144


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 62  GVASIMASVKWYIDHNITWLFIASV 136
           G  +++  +    D+N TW++IA V
Sbjct: 181 GKRNVVTPIVQSFDYNNTWVYIADV 205


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 512 KRKRS*THPSEWKIAETKTGPHR 580
           KRKRS + P E     +K G HR
Sbjct: 42  KRKRSWSRPRESAQTTSKAGIHR 64


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 512 KRKRS*THPSEWKIAETKTGPHR 580
           KRKRS + P E     +K G HR
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHR 185


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 552 LLKPKPDLIEHYPNKKIKKIYL 617
           +   +P+L+E +  +KI++IYL
Sbjct: 484 IFSERPNLLEGWKVEKIQEIYL 505


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/57 (21%), Positives = 24/57 (42%)
 Frame = +3

Query: 516 GNDPKHIPRNGKLLKPKPDLIEHYPNKKIKKIYLAQDENGFYLKNQNHKVKQNTETK 686
           GN+ K    +   L+ +    +H  ++  ++   ++D N  Y K      K + E K
Sbjct: 204 GNESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREYKKKDRRYEKLHNEKK 260


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 190 GEPHRHHYKRCQGHYSGHNR 131
           G PH HH+ + Q     H R
Sbjct: 348 GPPHHHHHHQTQSLQHLHYR 367


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 364 VLSINILIAAFLEVLWSILSVKISYRG 444
           +L  NI+   ++ +++S+L + I+Y G
Sbjct: 83  ILLQNIIDICWITMVYSLLGIIIAYTG 109


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 170 MVAVWFASTSEGEITDFYKDKVPFKD 247
           + A+W +  +   + DF  D   FKD
Sbjct: 64  ITAIWLSPINRSPMVDFGYDISDFKD 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,699
Number of Sequences: 438
Number of extensions: 4180
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)