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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1427
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    44   2e-05
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    29   1.0  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   3.2  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    26   5.6  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    26   7.4  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   7.4  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    26   7.4  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    25   9.8  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    25   9.8  

>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 27/78 (34%), Positives = 41/78 (52%)
 Frame = +2

Query: 47  SVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAAEL 226
           ++R  L  LP P+NDYE++ P + A E   ++   V  ED  D + R  +   EK     
Sbjct: 466 ALRELLAKLPKPKNDYELMEP-RFADETDVEATVGVLEEDATDRERRIQERIAEKERLAK 524

Query: 227 SRRSLAVQRARRVRPTST 280
           +RRS  +QR   +RP+ T
Sbjct: 525 ARRSQVIQR-DLIRPSVT 541


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
 Frame = +2

Query: 104 VPEQEAGEDKDDSAAVVS--VEDQADADARYAKEQEEKRAAELSRRSLAVQRARR 262
           + E+EA + KD     +   ++++A+A+A+   E++ +  AE + +  A ++A+R
Sbjct: 517 ISEEEASQRKDAIKLAIQQRIQEKAEAEAKRKAEEKARLEAEENAKREAEEQAKR 571


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 771 PVSHEVSFPFLNIFLLPSPCDFYSAL 694
           PV + V FP+L +FL     DF+  L
Sbjct: 729 PVDNSVDFPYLRLFLEKHADDFFRCL 754


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 18/88 (20%), Positives = 40/88 (45%)
 Frame = +2

Query: 2   DTPQISHQLQKQAKTSVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADAD 181
           DT ++ +   K  K   +    S  +    +E ++ E++  +DKD +  +   ED++ A 
Sbjct: 73  DTKEVQNIKPKSKKKKKKLNDSSDDIEGKYFEELLAEEDEEKDKDSAGLINDEEDKSPAK 132

Query: 182 ARYAKEQEEKRAAELSRRSLAVQRARRV 265
               +E+  +   + S R +A + A  +
Sbjct: 133 QSVLEERTSQEDVK-SEREVAEKLANEL 159


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +2

Query: 110 EQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAAELSRRS 238
           E+E  E ++DS      E ++++++   +E E +  ++ S RS
Sbjct: 90  EEEETESEEDSEVSDESESESESESESEEESESEEESDESERS 132


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +2

Query: 104 VPEQEAGEDKDDSAAVVSVEDQ----ADADARYAKEQEEKRAAELSRRSLAVQRARRVRP 271
           +P Q++ E K  +     VE Q    +D  A  AKE  EK  +  ++ S A Q +R    
Sbjct: 792 LPSQQSSESKQSTQHQQPVEVQKSIQSDVSAPKAKEVSEKPVSHQAKPSNASQLSRNTDD 851

Query: 272 T 274
           T
Sbjct: 852 T 852


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 116 EAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAA 220
           E G++ DDS   + V+   + +   + E+EEK  A
Sbjct: 532 EDGQNSDDSGGWIDVDSDDNIELSDSDEEEEKATA 566


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 164 PPRKRLRPNRPYLHQPLAPAPRFHSHFS 81
           PPR  + P R     P +  P+   HFS
Sbjct: 203 PPRATMHPMRVIFEIPQSEPPKLDDHFS 230


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 134 DDSAAVVSVEDQADADARYAKEQEEKRAAELSRRSLA 244
           + +AA    +D    +A   + +EEKRAAE ++  +A
Sbjct: 49  EQNAAASGSKDAKRQEALRKRREEEKRAAEAAKAEVA 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,832
Number of Sequences: 5004
Number of extensions: 46519
Number of successful extensions: 209
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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