BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1427 (819 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 44 2e-05 SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 29 1.0 SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 27 3.2 SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 5.6 SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 7.4 SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 7.4 SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 26 7.4 SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 25 9.8 SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce... 25 9.8 >SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosaccharomyces pombe|chr 1|||Manual Length = 757 Score = 44.4 bits (100), Expect = 2e-05 Identities = 27/78 (34%), Positives = 41/78 (52%) Frame = +2 Query: 47 SVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAAEL 226 ++R L LP P+NDYE++ P + A E ++ V ED D + R + EK Sbjct: 466 ALRELLAKLPKPKNDYELMEP-RFADETDVEATVGVLEEDATDRERRIQERIAEKERLAK 524 Query: 227 SRRSLAVQRARRVRPTST 280 +RRS +QR +RP+ T Sbjct: 525 ARRSQVIQR-DLIRPSVT 541 >SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizosaccharomyces pombe|chr 1|||Manual Length = 1403 Score = 28.7 bits (61), Expect = 1.0 Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 2/55 (3%) Frame = +2 Query: 104 VPEQEAGEDKDDSAAVVS--VEDQADADARYAKEQEEKRAAELSRRSLAVQRARR 262 + E+EA + KD + ++++A+A+A+ E++ + AE + + A ++A+R Sbjct: 517 ISEEEASQRKDAIKLAIQQRIQEKAEAEAKRKAEEKARLEAEENAKREAEEQAKR 571 >SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces pombe|chr 1|||Manual Length = 1272 Score = 27.1 bits (57), Expect = 3.2 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 771 PVSHEVSFPFLNIFLLPSPCDFYSAL 694 PV + V FP+L +FL DF+ L Sbjct: 729 PVDNSVDFPYLRLFLEKHADDFFRCL 754 >SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces pombe|chr 1|||Manual Length = 438 Score = 26.2 bits (55), Expect = 5.6 Identities = 18/88 (20%), Positives = 40/88 (45%) Frame = +2 Query: 2 DTPQISHQLQKQAKTSVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADAD 181 DT ++ + K K + S + +E ++ E++ +DKD + + ED++ A Sbjct: 73 DTKEVQNIKPKSKKKKKKLNDSSDDIEGKYFEELLAEEDEEKDKDSAGLINDEEDKSPAK 132 Query: 182 ARYAKEQEEKRAAELSRRSLAVQRARRV 265 +E+ + + S R +A + A + Sbjct: 133 QSVLEERTSQEDVK-SEREVAEKLANEL 159 >SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF3c|Schizosaccharomyces pombe|chr 1|||Manual Length = 918 Score = 25.8 bits (54), Expect = 7.4 Identities = 11/43 (25%), Positives = 24/43 (55%) Frame = +2 Query: 110 EQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAAELSRRS 238 E+E E ++DS E ++++++ +E E + ++ S RS Sbjct: 90 EEEETESEEDSEVSDESESESESESESEEESESEEESDESERS 132 >SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1310 Score = 25.8 bits (54), Expect = 7.4 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Frame = +2 Query: 104 VPEQEAGEDKDDSAAVVSVEDQ----ADADARYAKEQEEKRAAELSRRSLAVQRARRVRP 271 +P Q++ E K + VE Q +D A AKE EK + ++ S A Q +R Sbjct: 792 LPSQQSSESKQSTQHQQPVEVQKSIQSDVSAPKAKEVSEKPVSHQAKPSNASQLSRNTDD 851 Query: 272 T 274 T Sbjct: 852 T 852 >SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 719 Score = 25.8 bits (54), Expect = 7.4 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = +2 Query: 116 EAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAA 220 E G++ DDS + V+ + + + E+EEK A Sbjct: 532 EDGQNSDDSGGWIDVDSDDNIELSDSDEEEEKATA 566 >SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces pombe|chr 1|||Manual Length = 471 Score = 25.4 bits (53), Expect = 9.8 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = -2 Query: 164 PPRKRLRPNRPYLHQPLAPAPRFHSHFS 81 PPR + P R P + P+ HFS Sbjct: 203 PPRATMHPMRVIFEIPQSEPPKLDDHFS 230 >SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces pombe|chr 2|||Manual Length = 292 Score = 25.4 bits (53), Expect = 9.8 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +2 Query: 134 DDSAAVVSVEDQADADARYAKEQEEKRAAELSRRSLA 244 + +AA +D +A + +EEKRAAE ++ +A Sbjct: 49 EQNAAASGSKDAKRQEALRKRREEEKRAAEAAKAEVA 85 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,650,832 Number of Sequences: 5004 Number of extensions: 46519 Number of successful extensions: 209 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 196 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 208 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 400438000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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