Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1427
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 44 2e-05
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 29 1.0
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 27 3.2
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 5.6
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 7.4
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 7.4
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 26 7.4
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 25 9.8
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce... 25 9.8
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 44.4 bits (100), Expect = 2e-05
Identities = 27/78 (34%), Positives = 41/78 (52%)
Frame = +2
Query: 47 SVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAAEL 226
++R L LP P+NDYE++ P + A E ++ V ED D + R + EK
Sbjct: 466 ALRELLAKLPKPKNDYELMEP-RFADETDVEATVGVLEEDATDRERRIQERIAEKERLAK 524
Query: 227 SRRSLAVQRARRVRPTST 280
+RRS +QR +RP+ T
Sbjct: 525 ARRSQVIQR-DLIRPSVT 541
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +2
Query: 104 VPEQEAGEDKDDSAAVVS--VEDQADADARYAKEQEEKRAAELSRRSLAVQRARR 262
+ E+EA + KD + ++++A+A+A+ E++ + AE + + A ++A+R
Sbjct: 517 ISEEEASQRKDAIKLAIQQRIQEKAEAEAKRKAEEKARLEAEENAKREAEEQAKR 571
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 771 PVSHEVSFPFLNIFLLPSPCDFYSAL 694
PV + V FP+L +FL DF+ L
Sbjct: 729 PVDNSVDFPYLRLFLEKHADDFFRCL 754
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 5.6
Identities = 18/88 (20%), Positives = 40/88 (45%)
Frame = +2
Query: 2 DTPQISHQLQKQAKTSVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADAD 181
DT ++ + K K + S + +E ++ E++ +DKD + + ED++ A
Sbjct: 73 DTKEVQNIKPKSKKKKKKLNDSSDDIEGKYFEELLAEEDEEKDKDSAGLINDEEDKSPAK 132
Query: 182 ARYAKEQEEKRAAELSRRSLAVQRARRV 265
+E+ + + S R +A + A +
Sbjct: 133 QSVLEERTSQEDVK-SEREVAEKLANEL 159
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +2
Query: 110 EQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAAELSRRS 238
E+E E ++DS E ++++++ +E E + ++ S RS
Sbjct: 90 EEEETESEEDSEVSDESESESESESESEEESESEEESDESERS 132
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 7.4
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +2
Query: 104 VPEQEAGEDKDDSAAVVSVEDQ----ADADARYAKEQEEKRAAELSRRSLAVQRARRVRP 271
+P Q++ E K + VE Q +D A AKE EK + ++ S A Q +R
Sbjct: 792 LPSQQSSESKQSTQHQQPVEVQKSIQSDVSAPKAKEVSEKPVSHQAKPSNASQLSRNTDD 851
Query: 272 T 274
T
Sbjct: 852 T 852
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 116 EAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAA 220
E G++ DDS + V+ + + + E+EEK A
Sbjct: 532 EDGQNSDDSGGWIDVDSDDNIELSDSDEEEEKATA 566
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -2
Query: 164 PPRKRLRPNRPYLHQPLAPAPRFHSHFS 81
PPR + P R P + P+ HFS
Sbjct: 203 PPRATMHPMRVIFEIPQSEPPKLDDHFS 230
>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 292
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 134 DDSAAVVSVEDQADADARYAKEQEEKRAAELSRRSLA 244
+ +AA +D +A + +EEKRAAE ++ +A
Sbjct: 49 EQNAAASGSKDAKRQEALRKRREEEKRAAEAAKAEVA 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,832
Number of Sequences: 5004
Number of extensions: 46519
Number of successful extensions: 209
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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