Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1427
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974... 52 4e-07
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 33 0.27
04_04_0046 + 22344503-22345075 33 0.36
07_01_0561 + 4171812-4172144,4173468-4174253 32 0.48
11_04_0097 + 13448740-13450725 31 1.5
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 30 1.9
05_05_0299 - 23930657-23932627 30 1.9
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 30 1.9
08_02_0044 + 11556938-11557921 30 2.5
06_03_0595 - 22605177-22605536 30 2.5
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 29 3.4
05_01_0018 + 125697-126130,126231-126356,126726-126825,126950-12... 29 3.4
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153 29 3.4
11_03_0150 + 10810322-10810380,10810530-10810593,10810803-108110... 29 4.4
08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204 29 4.4
08_01_0329 - 2962018-2962695 29 4.4
07_01_1196 - 11369673-11369693,11369737-11370270 29 4.4
02_05_1060 + 33823599-33823941,33824018-33824400,33824483-33824803 29 4.4
12_02_0855 + 23703827-23704019,23704465-23704481,23705051-237052... 29 5.9
09_06_0116 - 20950649-20951281 29 5.9
01_07_0004 - 40354253-40354353,40354598-40354670,40356196-403563... 29 5.9
11_06_0657 + 25938382-25938443,25938511-25938718,25939222-259392... 28 7.8
09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842... 28 7.8
07_03_1387 + 26202975-26203274,26203363-26203449,26203541-262036... 28 7.8
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 28 7.8
03_02_0444 - 8543426-8543635,8543945-8544151,8544293-8544400,854... 28 7.8
01_06_0188 - 27310814-27311138,27311197-27311547,27311682-273116... 28 7.8
>04_03_0501 +
16593710-16593886,16595255-16595311,16595748-16597469,
16599045-16599326,16599521-16599637,16599655-16600365
Length = 1021
Score = 52.4 bits (120), Expect = 4e-07
Identities = 28/85 (32%), Positives = 52/85 (61%)
Frame = +2
Query: 2 DTPQISHQLQKQAKTSVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADAD 181
DT ++ + Q + + S+R+ S+P P+N+Y+IV+P E+K++ A +ED +D
Sbjct: 478 DTAKLELRRQAELRKSLRSGFASIPQPKNEYQIVMP-PITEEEKEE--AEEKIEDMSDRL 534
Query: 182 ARYAKEQEEKRAAELSRRSLAVQRA 256
AR E++ ++ A L +RS +QR+
Sbjct: 535 ARERAEEQARQEALLRKRSKVLQRS 559
Score = 37.1 bits (82), Expect = 0.017
Identities = 13/62 (20%), Positives = 33/62 (53%)
Frame = +3
Query: 513 LKKEMEVVKAGMSHGDLSIDAYTQVWEECLAQVLFLPGQHRYTRANLASKKDRLESAEKR 692
L++E++ ++ M H S++ + + + C ++F P + Y A++A D++ + +
Sbjct: 657 LEEEVQYLRVAMGHESESLEDFVKAHDACQEDLMFFPNNNSYGLASVAGNSDKIAALQYE 716
Query: 693 LE 698
E
Sbjct: 717 FE 718
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 182 HQHQLGPPRKRLRPNRPYLHQPLAPAPRFHSH 87
H H P R +P RP + QPL P P H H
Sbjct: 718 HPHLQPPARPAQQPPRPPVTQPLPPPPPLHQH 749
>04_04_0046 + 22344503-22345075
Length = 190
Score = 32.7 bits (71), Expect = 0.36
Identities = 21/48 (43%), Positives = 24/48 (50%)
Frame = +3
Query: 246 CSARGASGRRQRVGAARCRLAVRPHAAAARRGTAQSRDGHHAALRCPQ 389
C GASG+RQR AR A+RP AAA A S G R P+
Sbjct: 33 CCGGGASGKRQR-ARARVAAAMRPADAAASVAQAASPGGGGEGTRRPR 79
>07_01_0561 + 4171812-4172144,4173468-4174253
Length = 372
Score = 32.3 bits (70), Expect = 0.48
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +3
Query: 558 DLSIDAYTQVWEECLAQVLFLPGQHRYTRANLASKKDRLESAEKRLEQ 701
D ID + + +A+V+ L + + T+ANL + +DRL+ E+R +Q
Sbjct: 167 DAEIDRLKRDKQLLMAEVVKLRQEQQNTKANLKAMEDRLQGTEQRQQQ 214
>11_04_0097 + 13448740-13450725
Length = 661
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 125 EDKDDSAAVVSVEDQADADARYAKEQEEKRAAELSRRSLAVQRARR 262
E + AA + E++A A+A AKE+EE++ AE + A RA R
Sbjct: 563 EREKAEAAARAAEEKARAEA-LAKEEEERKKAEAKAKEEAAARASR 607
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -2
Query: 203 LVP*HI*HQHQL--GPPRKRLRPNRPYLHQPLAPAPRFHSHFSEQAEIAKR 57
LVP I H ++L PPR R+ R H P AP+PR +A R
Sbjct: 84 LVP--IDHGYRLPESPPRPRVASRRQSTHAPTAPSPRQPGRLPAHLTVASR 132
>05_05_0299 - 23930657-23932627
Length = 656
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 53 RNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADADARYAKEQEE 208
R ALQ L R +V PE+E ED DD ++ +D A A R ++ E
Sbjct: 50 REALQRLE-ERKKKGLVPPEEEEEEDDDDDESLSDDDDAAIASRRVDRQMFE 100
>02_04_0179 + 20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 161 EDQADADARYAKEQEEKRAAELSR 232
+DQ +AD + AKE+EEK AE+ +
Sbjct: 999 KDQKEADQKKAKEEEEKHMAEIKK 1022
>08_02_0044 + 11556938-11557921
Length = 327
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 74 PVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAAE 223
P P + VV EQ+ E+++++A + ++D A++Q+++ E
Sbjct: 162 PQPEENNTAVVVEQQQEEEEEEAAVTTPPQPESDTAVAVAEQQQQQEEEE 211
>06_03_0595 - 22605177-22605536
Length = 119
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 137 DSAAVVSVEDQADA-DARYAKEQEEKRAAELSRR 235
D+A VVS +A A DARY +E EE+ A RR
Sbjct: 80 DTATVVSATGKATAADARYGEEDEEEVARARERR 113
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 301 ASLSALTPLQHAEELLKAEMVTMLHYDALRDPPEGVDKKRAIQLQASHLAYLEQHP 468
A+ ++L L +A +L+A T + A+R G AI L S L++ HP
Sbjct: 32 AAAASLASLPYALSILRAHPTTFSYNSAIRALARGPRPHLAISLYRSMLSHSRSHP 87
>05_01_0018 +
125697-126130,126231-126356,126726-126825,126950-126969,
127118-127220,127331-127469,127577-127791,127873-128523
Length = 595
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 110 EQEAGEDKDDSAAVVSVE-DQADADARYAKEQEEKRAAELSRRSLAVQRARRVR 268
E+E G+ K DSA VV + ++ A R +++ E+K+A + ++A +R++
Sbjct: 466 EKEQGDKKMDSADVVDIAVEKKQATKRASEKAEKKQARKRKGDAVATNDGKRMK 519
>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
Length = 1112
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 92 YEIVVPE--QEAGEDKDDSAAVVSVEDQA-DADARYAKEQEEKRAAELS 229
Y +V PE + G+D DDS +V + Q+ D D R +EQ A+ S
Sbjct: 1017 YSVVQPEPSHDGGDDDDDSESVPATPCQSEDDDHRRRREQGSDSASNFS 1065
>11_03_0150 +
10810322-10810380,10810530-10810593,10810803-10811047,
10811627-10811747,10811821-10811895,10811986-10812112,
10812194-10812939,10813065-10813195,10813547-10813636,
10814000-10814105
Length = 587
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 107 PEQEAGEDKDDS---AAVVSVEDQADADARYAKEQEEKRAAELSRRSLAVQRARR 262
P + AG D DDS A ++E + AR AKE+++++ + Q +R
Sbjct: 526 PSKYAGRDDDDSDMEADFATIEMEEQRSARIAKEEDDEQLRLIEEEERREQERKR 580
>08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204
Length = 449
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = -2
Query: 167 GPPRKRLRPNRPYLHQPLAPAPRFHSHFSEQAEIAKRF*LMFLLVFEVDGKFE 9
GPP RLR PY H P A F H E +R+ ++ L V DG+ E
Sbjct: 138 GPPGHRLRRQEPYGHVPYGEAFSFTYH-----EATERYKIVHLAV--SDGRLE 183
>08_01_0329 - 2962018-2962695
Length = 225
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 110 EQEAGEDKDDSAAVVSVED-QADADARYAKEQEEKRAAELSR 232
+ E E+KD +++ VS ED + + + + KE+E KR +S+
Sbjct: 173 DDEEEEEKDQTSSSVSSEDEEEEEEEKLEKERERKRKEMMSK 214
>07_01_1196 - 11369673-11369693,11369737-11370270
Length = 184
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 219 PSCRVARWRCSARGASGRRQRV 284
PS +ARW + GA+GRR+RV
Sbjct: 100 PSSALARWADALTGAAGRRRRV 121
>02_05_1060 + 33823599-33823941,33824018-33824400,33824483-33824803
Length = 348
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/78 (20%), Positives = 34/78 (43%)
Frame = +2
Query: 29 QKQAKTSVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADADARYAKEQEE 208
Q +A+ L PR D ++ + + E E+ D+ A + D D +E+EE
Sbjct: 218 QMEAELEAELTLLQCATPRRDRQLEIGDDE--EESTDTHAATFADADDDTDGADDEEEEE 275
Query: 209 KRAAELSRRSLAVQRARR 262
+ + ++ ++ + R
Sbjct: 276 EESGAAAQGGVSARELER 293
>12_02_0855 +
23703827-23704019,23704465-23704481,23705051-23705254,
23705486-23705605,23705867-23706472
Length = 379
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 122 GEDKDDSAAVVSVEDQADADARYAKEQEEKRAAELS 229
GED DDS AV E++ D D E++++ AA+ S
Sbjct: 38 GEDSDDSCAVSDEEEEEDED---EGEEDQEGAAQCS 70
>09_06_0116 - 20950649-20951281
Length = 210
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Frame = +3
Query: 207 KNALPSCRVARWRCSARGASGRR-------QRVGAARCRLAVRPHAAAARRGTAQSRDGH 365
K +P+ VARW +A A+ + A+ ++V+P AAA TA + H
Sbjct: 31 KKLVPAVLVARWWPAAMLATAPSPVLFLLLNVIIASIVVVSVQPRRAAAASATAAAAAEH 90
Query: 366 HAALRCPQG 392
AA RC +G
Sbjct: 91 DAAKRCGEG 99
>01_07_0004 -
40354253-40354353,40354598-40354670,40356196-40356319,
40357821-40358222,40358704-40358732
Length = 242
Score = 28.7 bits (61), Expect = 5.9
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Frame = +3
Query: 195 RNKKKNALPSCRVARWRCSARGASG----------RRQRVGAARCRLAVRPHAAAARRGT 344
R + A+P C + R R +AR AS RRQR G AR R AAA R
Sbjct: 55 RGQVNPAMPHCHLDRRRTAARSASALCLMRLSTKTRRQREGDARRHCRRRKVAAACRFIF 114
Query: 345 AQSRDGH 365
++ GH
Sbjct: 115 SERLAGH 121
>11_06_0657 +
25938382-25938443,25938511-25938718,25939222-25939268,
25939473-25939805,25940529-25940613,25940689-25940884,
25941012-25941182,25941261-25941318,25941429-25941657,
25942296-25943183
Length = 758
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 42 KHQSETLCNLCLFREMTMKSWCRSKRLVKIRTIRPQSFPWRTKLMLMLDMLRNKKK 209
+ +ET C+L F T + W + V + + P + + DML NKK+
Sbjct: 642 RETNETACHLVAFCRYTRRIWRLTASWVAYQQLDPNHWDPCQSIQEWWDMLNNKKE 697
>09_02_0607 -
11183382-11183387,11183481-11183637,11184220-11184284,
11184397-11184469,11184759-11184905,11185515-11185562,
11185637-11185716,11186112-11186439,11186525-11186576,
11187397-11187523,11187613-11187990
Length = 486
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +2
Query: 23 QLQKQAKTSVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADADARY---- 190
Q Q+++ R A + P + VP+++ ED+DD V D DA + Y
Sbjct: 69 QQQEESLADQRPAAAATAAPSPSFSFPVPKKDGEEDEDDDD--VDEFDGFDAQSEYDGGV 126
Query: 191 --AKEQEEKRAAELSRRSLAVQRA 256
E++EK A + + +R+
Sbjct: 127 PEIDEEDEKALAAFMSKDTSSKRS 150
>07_03_1387 +
26202975-26203274,26203363-26203449,26203541-26203648,
26203708-26203980,26205242-26205355,26205900-26206268
Length = 416
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +3
Query: 225 CRVARWRCSARGASGRRQRVGAARCRLAVRPHAAAARRGTAQSR 356
C VA + ARG + AAR R A R HA AA+ G A +R
Sbjct: 34 CSVAPAQVRARGPT--EWWPAAARRRRAPRRHAVAAKAGAADAR 75
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 195 RNKKKNALPSCRVARWRCSARGASGRRQRVGAARCRLAVRPHAAAARRGTAQSRDG 362
+ K K+ P R + SA G++ + GAA + P A + AQ RDG
Sbjct: 53 KKKPKSETPRKRDKLFGGSASGSAASKGGAGAAPASASSSPSADGRKAAAAQLRDG 108
>03_02_0444 -
8543426-8543635,8543945-8544151,8544293-8544400,
8544744-8544803,8544914-8544989,8545190-8545347,
8545479-8545541,8545653-8545737,8546423-8547438
Length = 660
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +2
Query: 113 QEAGEDKDDSAAVVSVED 166
Q+AGE++DD+AAV+++E+
Sbjct: 254 QDAGEEEDDAAAVLTLEE 271
>01_06_0188 -
27310814-27311138,27311197-27311547,27311682-27311693,
27313598-27313662,27314945-27314968
Length = 258
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -1
Query: 315 GGQRGGTAQH-RHVDVGRTRRA----RCTASERRDSSAAR 211
GG+RGG+++H RH D GR R R S R+SS R
Sbjct: 203 GGRRGGSSRHERHDDGGRRRHGGSPPRRARSPVRESSEER 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,613,833
Number of Sequences: 37544
Number of extensions: 358255
Number of successful extensions: 1637
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1630
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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