Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1427
         (819 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58299| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.42)             96   3e-20
SB_13989| Best HMM Match : Myb_DNA-binding (HMM E-Value=9.6e-24)       36   0.030
SB_13878| Best HMM Match : Vicilin_N (HMM E-Value=0.2)                 30   2.6  
SB_8393| Best HMM Match : DUF662 (HMM E-Value=3.9e-26)                 30   2.6  
SB_11981| Best HMM Match : CH (HMM E-Value=0.00075)                    30   2.6  
SB_8156| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)              29   4.5  
SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)                   28   7.9  
SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)          28   7.9  
SB_46404| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_46830| Best HMM Match : Succ_DH_flav_C (HMM E-Value=3.2e-37)        28   7.9  

>SB_58299| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.42)
          Length = 329

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 43/62 (69%), Positives = 53/62 (85%)
 Frame = +3

Query: 513 LKKEMEVVKAGMSHGDLSIDAYTQVWEECLAQVLFLPGQHRYTRANLASKKDRLESAEKR 692
           L++EM+ VK+ M+H DL ++AY++VWEEC AQVLFLP Q RYTRA +ASKKDRLES EKR
Sbjct: 189 LRQEMDFVKSKMAHSDLPLEAYSKVWEECYAQVLFLPSQQRYTRAAMASKKDRLESLEKR 248

Query: 693 LE 698
           LE
Sbjct: 249 LE 250



 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 33/76 (43%), Positives = 43/76 (56%)
 Frame = +2

Query: 26  LQKQAKTSVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADADARYAKEQE 205
           LQ +AK  +   L SLP P ND+EIV+PE  A E  ++   +  VED AD D R    + 
Sbjct: 7   LQSEAKEQLLAGLASLPAPSNDFEIVLPETPA-EASEEHKPMDFVEDAADIDERALALRA 65

Query: 206 EKRAAELSRRSLAVQR 253
           ++   E  RRS AVQR
Sbjct: 66  KQEELERRRRSQAVQR 81



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
 Frame = +1

Query: 271 DVNVSVLRGAASLSALTPLQHAEELLKAEMVTMLHYDALRDPPEG-----VDKKRAIQLQ 435
           +VN SVLR       L+ LQ AEEL+K EM+ ML  D +  P         +KK     Q
Sbjct: 88  NVNTSVLRPTNVEPPLSALQMAEELIKKEMIVMLRNDIINHPTSQQIESLTNKKTRNAAQ 147

Query: 436 A---SHLAYLEQHPYEEF 480
           A    + A LE+ P E F
Sbjct: 148 AVITGNRAALERDPMENF 165


>SB_13989| Best HMM Match : Myb_DNA-binding (HMM E-Value=9.6e-24)
          Length = 478

 Score = 36.3 bits (80), Expect = 0.030
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +2

Query: 23  QLQKQAKTSVRNALQSLPVPRNDYEIVVPE 112
           Q Q +AK  +   L SLP P ND+EIV+PE
Sbjct: 449 QQQSEAKEQLLAGLASLPAPSNDFEIVLPE 478


>SB_13878| Best HMM Match : Vicilin_N (HMM E-Value=0.2)
          Length = 611

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 113 QEAG-EDKDDSAAVVSVEDQADADARYAKEQEEKRAAELSRRSLAVQRARRVR 268
           QEAG  +  D   + S  ++A ADA Y +++ + +    SRR  A   A  +R
Sbjct: 256 QEAGIRENKDKEIMTSRREKAKADAEYMRQENKDKEIMTSRREKAKADAEYMR 308


>SB_8393| Best HMM Match : DUF662 (HMM E-Value=3.9e-26)
          Length = 319

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = +2

Query: 47  SVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAAEL 226
           SVR   +  P P ++  +  P+ +  E+K  S+  +  + Q D +     E E  +A EL
Sbjct: 78  SVREIPRENPAPESERSLSPPDSKIQEEK-PSSVELEEQKQMDTEPEMITEPERIQAIEL 136

Query: 227 SRRSLAVQRARRV 265
           S      Q+ + +
Sbjct: 137 SALEKLQQKQKEI 149


>SB_11981| Best HMM Match : CH (HMM E-Value=0.00075)
          Length = 823

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = +2

Query: 29  QKQAKTSVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADADARYAKEQEE 208
           +K+ K S    L S  VP+ +++ +VP +   + +        V  +   D+  AK  + 
Sbjct: 583 EKEIKVSTNRKLVSKQVPKLNFDFLVPSESLFDIESPRTHFTGVSYKDKCDSAKAKLADY 642

Query: 209 KRAAELSRRSL--AVQRARRVRPT 274
            R  EL ++     +Q+  R  P+
Sbjct: 643 DRQLELXKKQYFDVMQQGYRPEPS 666


>SB_8156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +2

Query: 11  QISHQLQKQAKTSVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADADARY 190
           Q+SH LQK A+  VR  L+       D      E+  GE  DD  ++ +  D     +  
Sbjct: 102 QLSHVLQKYARAQVRKTLERFVEIDED-----EEEMPGEASDDVQSIAN--DDCTMPSEQ 154

Query: 191 AKEQEEKRAAE 223
            +E+ EK   E
Sbjct: 155 PRERSEKPKLE 165


>SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)
          Length = 546

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 62  LQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSV-EDQADADARYAKEQEEKRAAELSRR 235
           + S P PRN+   V+    AG + DD  A   V ED   A    + E+ ++   E++++
Sbjct: 449 IASDPTPRNERSFVITRLRAGAETDDFKAFFGVWEDHRTAAKGMSIEEMKELQEEVNKQ 507


>SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)
          Length = 303

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 108 RSKRLVKIRTIRPQSFPWRTKLMLMLDMLRNKKKNALPSCRVARWRCSARGASGRRQRV 284
           R  R+   +T+  +S  WR+ LML +   R      +P+C   R R   RGA+G  + V
Sbjct: 170 RRLRIYGRKTVILRSVVWRSNLMLGILQDRRGSNCKVPTC--YRCRNGKRGATGASRAV 226


>SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)
          Length = 592

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +3

Query: 195 RNKKKNALPSCRVARWRCSARGASGRRQRVGAARCRLAVRPHAAAARRGTAQSRDGHHAA 374
           R    + +  CR    + S RG   RR   G A CR   R     ++RG  + R+    A
Sbjct: 458 RKMTSSGVAICRYRTRQVSQRGERERRHHPGVAICRYRTR---QVSQRGVRERRNHPGVA 514

Query: 375 LR 380
           +R
Sbjct: 515 IR 516


>SB_46404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +2

Query: 32  KQAKTSVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAA--VVSVEDQADADARYAKEQE 205
           +Q    V+++L +LP      +I       GE+K  +       VED +D    Y+K  E
Sbjct: 177 RQIMIGVQSSLIALPGNLIILQIFRNITPRGEEKKQTKRQKAYEVEDTSDESECYSKTAE 236

Query: 206 EKRAAELSRRSLAVQRARRVRP 271
           EK    + + +  V++ +++ P
Sbjct: 237 EKGENAVDKENKGVEKKKKLCP 258


>SB_46830| Best HMM Match : Succ_DH_flav_C (HMM E-Value=3.2e-37)
          Length = 333

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 147 QSFPWRTKLMLMLDMLRNKKKNALPSCRVARWRCSARGASGRRQRVGAARCRLAVR 314
           +S  W + L+  L+ L+N   NAL + + A  R  +RGA  R    GA+     +R
Sbjct: 232 RSMVWNSDLVESLE-LQNLMLNALMTIKSAEARKESRGAHAREDYKGASHSPFRLR 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,611,931
Number of Sequences: 59808
Number of extensions: 375044
Number of successful extensions: 2226
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2198
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)