Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1427
(819 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75711-11|CAB00038.1| 755|Caenorhabditis elegans Hypothetical p... 50 3e-06
Z75710-10|CAB00029.1| 755|Caenorhabditis elegans Hypothetical p... 50 3e-06
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 31 0.75
AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical ... 31 0.99
AL132877-9|CAC70109.2| 529|Caenorhabditis elegans Hypothetical ... 30 1.7
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 30 1.7
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr... 30 2.3
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik... 30 2.3
Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical p... 29 3.0
Z81082-5|CAB03093.2| 429|Caenorhabditis elegans Hypothetical pr... 29 5.3
M77697-3|AAA27898.3| 616|Caenorhabditis elegans Hypothetical pr... 29 5.3
AL021175-4|CAA15971.1| 356|Caenorhabditis elegans Hypothetical ... 29 5.3
AY204175-1|AAO39179.1| 238|Caenorhabditis elegans nuclear recep... 28 7.0
AL132848-5|CAB60389.2| 702|Caenorhabditis elegans Hypothetical ... 28 7.0
AL021470-2|CAE17952.1| 398|Caenorhabditis elegans Hypothetical ... 28 7.0
AL021470-1|CAA16292.1| 401|Caenorhabditis elegans Hypothetical ... 28 7.0
Z78059-6|CAH04727.1| 362|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z78014-4|CAH04707.1| 362|Caenorhabditis elegans Hypothetical pr... 28 9.2
AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical ... 28 9.2
>Z75711-11|CAB00038.1| 755|Caenorhabditis elegans Hypothetical
protein D1081.8 protein.
Length = 755
Score = 49.6 bits (113), Expect = 3e-06
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Frame = +2
Query: 35 QAKTSVRNALQSLPVPRNDYEIVVPEQE----AGEDKDDSAAVVSVEDQADADARYAKEQ 202
+ K S++ AL SLP P+ND+E+V P+ + A ED+ + +ED ++ AK
Sbjct: 451 EQKASLKRALASLPTPKNDFEVVGPDDDEVEGAVEDESNQDEDGWIEDASERAENKAKRN 510
Query: 203 EEKRAAELSRRSLAVQRA 256
E R + RS +QR+
Sbjct: 511 AENRVRNMKMRSQVIQRS 528
>Z75710-10|CAB00029.1| 755|Caenorhabditis elegans Hypothetical
protein D1081.8 protein.
Length = 755
Score = 49.6 bits (113), Expect = 3e-06
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Frame = +2
Query: 35 QAKTSVRNALQSLPVPRNDYEIVVPEQE----AGEDKDDSAAVVSVEDQADADARYAKEQ 202
+ K S++ AL SLP P+ND+E+V P+ + A ED+ + +ED ++ AK
Sbjct: 451 EQKASLKRALASLPTPKNDFEVVGPDDDEVEGAVEDESNQDEDGWIEDASERAENKAKRN 510
Query: 203 EEKRAAELSRRSLAVQRA 256
E R + RS +QR+
Sbjct: 511 AENRVRNMKMRSQVIQRS 528
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 31.5 bits (68), Expect = 0.75
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 110 EQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAAELSRR 235
E++ E + + AA +E++A+ DA+ E+EE+R E +R
Sbjct: 155 ERQQKEKEREDAARREIEEKAEMDAKRVAEEEEERRKEKEKR 196
>AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical
protein Y48G1BM.5 protein.
Length = 994
Score = 31.1 bits (67), Expect = 0.99
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +1
Query: 706 EITWRRKQKNVQKWKRNFVANRRLPESCRS 795
++T +K+KN+ K K NF + +RLP+S +S
Sbjct: 346 DVTAAQKRKNLAKKKINFRSRKRLPQSTKS 375
>AL132877-9|CAC70109.2| 529|Caenorhabditis elegans Hypothetical
protein Y105E8B.3 protein.
Length = 529
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 110 EQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAAE 223
E++ GED+DDS S+ED + K+ EE +A E
Sbjct: 335 EEDLGEDEDDSDDSKSMEDIQEEPEDLEKDHEELQAQE 372
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +2
Query: 125 EDKDDSAAVVSVEDQADADARYAKEQEEKRAAELSRRSLAVQRARRVRPTS 277
EDK D AAV + QA ++Q++++AA ++ S A ++A R RP +
Sbjct: 2261 EDKKDMAAVAAA--QAQFLRLQQQQQQQQQAAAVAASSSASRKASRKRPNN 2309
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Frame = +2
Query: 80 PRNDYE----IVVPEQEAGEDK-DDSAAVVSVEDQADADARYAKEQEEKRAAELSRRSLA 244
PR D E + V E + + +D+ + VSV+ +A+ + R K ++EK+AA+ ++
Sbjct: 522 PRQDSEQQAPVAVKSPEMKKRRPNDTDSDVSVDSEAEEERRRKKAKKEKKAAKKHKKEKK 581
Query: 245 VQRARRVRPTS 277
++ R+ R S
Sbjct: 582 SKKHRKRRSPS 592
>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical
protein F01G4.1 protein.
Length = 1474
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 89 DYEIVVPEQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRA 217
+YEIV P + +D+++ VE + + D +YA EE +A
Sbjct: 440 EYEIV-PRDQLSDDEEEEEEEAPVEPEEEKDDQYAGMDEETKA 481
>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical
protein F01G4.1 protein.
Length = 1474
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 89 DYEIVVPEQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRA 217
+YEIV P + +D+++ VE + + D +YA EE +A
Sbjct: 440 EYEIV-PRDQLSDDEEEEEEEAPVEPEEEKDDQYAGMDEETKA 481
>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
protein protein.
Length = 1474
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 89 DYEIVVPEQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRA 217
+YEIV P + +D+++ VE + + D +YA EE +A
Sbjct: 440 EYEIV-PRDQLSDDEEEEEEEAPVEPEEEKDDQYAGMDEETKA 481
>Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical
protein Y57G11C.20 protein.
Length = 649
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 110 EQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAAELSRRSLAVQRARR 262
E+ ++K D A V+ QA+A + +EQEEK+ E R A Q+ RR
Sbjct: 221 EKRRAKEKADRDAHVARHKQAEALEKKKREQEEKQKNE--DRERATQKERR 269
>Z81082-5|CAB03093.2| 429|Caenorhabditis elegans Hypothetical
protein F42G4.2 protein.
Length = 429
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 2 DTPQISHQLQKQAKTSVRNALQSLPVPRNDYEIVVPEQE 118
DT S QL K A+ ++RN+ P P D+EI P E
Sbjct: 191 DTMPESSQLNKSAR-ALRNSSHKKPEPAPDFEIFKPNGE 228
>M77697-3|AAA27898.3| 616|Caenorhabditis elegans Hypothetical
protein B0303.4 protein.
Length = 616
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Frame = +2
Query: 5 TPQISHQLQKQAKTSVRNALQSLP--------VPRNDYEIVVPEQEAGE---DKDDSAAV 151
TP I+ +Q T N Q+ P P +IV+ +QE + D DDS+
Sbjct: 208 TPSINPDMQHHLSTRTSNVTQTQPPTNQVFADTPELTEDIVIDQQEEDDEEDDDDDSSDD 267
Query: 152 VSVEDQADADARYAKEQEE 208
+ED + + + E+ E
Sbjct: 268 AIIEDHEEEEGQDDDEETE 286
>AL021175-4|CAA15971.1| 356|Caenorhabditis elegans Hypothetical
protein Y6E2A.5 protein.
Length = 356
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/85 (25%), Positives = 33/85 (38%)
Frame = +2
Query: 23 QLQKQAKTSVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADADARYAKEQ 202
++Q K + Q+LP P E DS ++ +AR+ KE
Sbjct: 94 RIQIHKKNFEKQKSQTLPTSSKIDSKTSPPIEVRRGSRDSLDEQFLKTLKSQEARFEKEL 153
Query: 203 EEKRAAELSRRSLAVQRARRVRPTS 277
EKR +R+ A Q R+R S
Sbjct: 154 REKREEREARKIKAYQELIRLRKES 178
>AY204175-1|AAO39179.1| 238|Caenorhabditis elegans nuclear receptor
NHR-65 protein.
Length = 238
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = +3
Query: 216 LPSCRVARWRCSARGASGRRQRVGAARCRLAVRPHAAAARRGTAQSRDGHHA-ALRCPQG 392
L C + RC G +G GA CR AA R + + H AL+C
Sbjct: 3 LEPCSSSPERCKVCGDTGNGMHFGAFTCRACAAFFRRAASRKFLRKCENHLIFALKCK-- 60
Query: 393 PA*RCR*KACY 425
CR + CY
Sbjct: 61 ---NCRLQRCY 68
>AL132848-5|CAB60389.2| 702|Caenorhabditis elegans Hypothetical
protein Y47H10A.1 protein.
Length = 702
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 95 EIVVPEQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAAELSRRSLA 244
E+ PE+E +DK+ A S ++ +E+E K E++R S +
Sbjct: 17 EVDSPEEEYEDDKETDAYNFSTITNESSEVARQREEENKDEKEIARTSFS 66
>AL021470-2|CAE17952.1| 398|Caenorhabditis elegans Hypothetical
protein Y17D7A.3b protein.
Length = 398
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = +3
Query: 216 LPSCRVARWRCSARGASGRRQRVGAARCRLAVRPHAAAARRGTAQSRDGHHA-ALRCPQG 392
L C + RC G +G GA CR AA R + + H AL+C
Sbjct: 3 LEPCSSSPERCKVCGDTGNGMHFGAFTCRACAAFFRRAASRKFLRKCENHLIFALKCK-- 60
Query: 393 PA*RCR*KACY 425
CR + CY
Sbjct: 61 ---NCRLQRCY 68
>AL021470-1|CAA16292.1| 401|Caenorhabditis elegans Hypothetical
protein Y17D7A.3a protein.
Length = 401
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = +3
Query: 216 LPSCRVARWRCSARGASGRRQRVGAARCRLAVRPHAAAARRGTAQSRDGHHA-ALRCPQG 392
L C + RC G +G GA CR AA R + + H AL+C
Sbjct: 3 LEPCSSSPERCKVCGDTGNGMHFGAFTCRACAAFFRRAASRKFLRKCENHLIFALKCK-- 60
Query: 393 PA*RCR*KACY 425
CR + CY
Sbjct: 61 ---NCRLQRCY 68
>Z78059-6|CAH04727.1| 362|Caenorhabditis elegans Hypothetical
protein C34B4.3 protein.
Length = 362
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +3
Query: 9 LKFPINFKNKQKHQSETLCNLC 74
++ P+NF+N+++ S +LC LC
Sbjct: 127 IRKPLNFRNQKRKTSYSLCALC 148
>Z78014-4|CAH04707.1| 362|Caenorhabditis elegans Hypothetical
protein C34B4.3 protein.
Length = 362
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +3
Query: 9 LKFPINFKNKQKHQSETLCNLC 74
++ P+NF+N+++ S +LC LC
Sbjct: 127 IRKPLNFRNQKRKTSYSLCALC 148
>AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical
protein Y59E9AL.4 protein.
Length = 1100
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 128 DKDDSAAVVSVEDQADADARYAKEQEEKRAAELSRR 235
D D +AA+V D +Y K ++ K+ AEL RR
Sbjct: 904 DSDSAAAMVRDFIVNDPSIKYQKHEKRKKEAELVRR 939
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,095,427
Number of Sequences: 27780
Number of extensions: 280127
Number of successful extensions: 1159
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -