Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1427
(819 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09770.1 68414.m01096 myb family transcription factor contain... 52 3e-07
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ... 31 0.70
At1g50750.1 68414.m05707 expressed protein 31 1.2
At3g54390.1 68416.m06013 expressed protein similar to 6b-interac... 30 1.6
At4g11480.1 68417.m01846 protein kinase family protein contains ... 29 3.7
At5g24060.1 68418.m02826 expressed protein strong similarity to ... 29 4.9
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN... 29 4.9
At3g11450.1 68416.m01396 DNAJ heat shock N-terminal domain-conta... 29 4.9
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 29 4.9
At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containi... 29 4.9
At3g54540.1 68416.m06035 ABC transporter family protein similar ... 28 6.5
At1g33040.1 68414.m04068 nascent polypeptide-associated complex ... 28 6.5
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 28 6.5
At1g10890.1 68414.m01251 F-box family protein contains Pfam PF00... 28 6.5
At5g22950.1 68418.m02683 SNF7 family protein contains Pfam domai... 28 8.6
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c... 28 8.6
>At1g09770.1 68414.m01096 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 844
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 DTPQISHQLQKQAKTSVRNALQSLPVPRNDYEIVV-PEQEAGEDKDDSAAVVSVEDQADA 178
++ ++ Q +++A+ S+R+ L LP P+N+Y+IV P E E+ ++ ED +D
Sbjct: 461 ESAKLERQRREEARRSLRSGLTGLPQPKNEYQIVAQPPPEESEEPEEKIE----EDMSDR 516
Query: 179 DARYAKEQEEKRAAELSRRSLAVQR 253
AR E+E ++ A L +RS +QR
Sbjct: 517 IAREKAEEEARQQALLKKRSKVLQR 541
>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}, SP|P40991 Nucleolar protein NOP2
{Saccharomyces cerevisiae}; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 682
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +2
Query: 56 NALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAAELSRR 235
N QS +D V + E D DD A + ++ R KE++EK+ E +
Sbjct: 566 NVKQSSEEGDDDAVETVEQAEVSSDDDDEAEAIEETEKPSVPVRQPKERKEKKNKEKLAK 625
Query: 236 SLAVQRARR 262
S +R ++
Sbjct: 626 SKEDKRGKK 634
>At1g50750.1 68414.m05707 expressed protein
Length = 816
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 519 KEMEVVKAGMSHGDLSIDAYTQVWEECLAQVLFLPGQHRYTRANLASKKDRLESAEKRLE 698
+++E K GD + D+Y + EE L L + NLAS K+R ++++E
Sbjct: 752 EDLEKRKNDFGEGDAANDSYEKRLEELKVLALSLKEHITMAQRNLASLKERSAMRQRKIE 811
Query: 699 QNR 707
R
Sbjct: 812 AAR 814
>At3g54390.1 68416.m06013 expressed protein similar to
6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
GI:18149189
Length = 296
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 107 PEQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAAELSRRSLAVQRARRVR 268
PE++A D D S VV + + R KE++E+ A + + V R+ R R
Sbjct: 182 PEKDAEMDTDSSTPVVKTKVRGKKVKRRYKEEKEEIAGSIRWLAEVVMRSERAR 235
>At4g11480.1 68417.m01846 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 656
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 534 VKAGMSHGDLSIDAYTQVWEECLAQVLFLPGQHRY 638
+ +G+ GDL+ AYT+ WEE + ++ G+ RY
Sbjct: 141 LNSGLFQGDLA--AYTRTWEEFMNSMITRVGRTRY 173
>At5g24060.1 68418.m02826 expressed protein strong similarity to
unknown protein (emb|CAB61996.1); expression supported
by MPSS
Length = 464
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 110 EQEAGEDKDDSAAVVSVEDQADADARYAKEQEE 208
+++ GEDKDD V +ED D D Y + +E
Sbjct: 193 DEDEGEDKDDEEWVAVLEDGDDED-NYVSDSDE 224
>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
topoisomerase II / DNA gyrase (TOP2) identical to
SP|P30182 DNA topoisomerase II (EC 5.99.1.3)
{Arabidopsis thaliana}
Length = 1473
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 571 TRTLKSGRNV*HRYFFYPVNIVTRVLIWQARRIV*NLLRKD*SRIEITW 717
TRT + RY F ++ VTR+L + ++ + L +D RIE TW
Sbjct: 781 TRTSGGKDSASARYIFTKLSPVTRILFPKDDDLLLDYLNEDGQRIEPTW 829
>At3g11450.1 68416.m01396 DNAJ heat shock N-terminal
domain-containing protein / cell division
protein-related similar to GlsA [Volvox carteri f.
nagariensis] GI:4633129; contains Pfam profiles PF00226
DnaJ domain, PF00249 Myb-like DNA-binding domain
Length = 663
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 83 RNDYEIVV-PEQEAGEDKDDSAAVVSVEDQADADARYAKEQEEKRAAELSRRSLAVQRAR 259
R D IV E+E E + A + + + + DA A E+E++R E +R A + A+
Sbjct: 309 RKDPRIVKRKEEEKAEKQQKKDAKIQAKKKQEEDAAIAAEEEKRRKEEEEKR--AAESAQ 366
Query: 260 RVRPT 274
+ + T
Sbjct: 367 QQKKT 371
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/69 (21%), Positives = 38/69 (55%)
Frame = +2
Query: 29 QKQAKTSVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADADARYAKEQEE 208
+ + K++ ++A + + E+V +Q + + SA S++D+++A+ KE+ E
Sbjct: 372 EAEPKSNEQSAKAKEKLSESSSEVVENQQTTEDTTEVSADSASMDDRSNAEQPKEKEEVE 431
Query: 209 KRAAELSRR 235
K A+ +++
Sbjct: 432 KEKAKDTKK 440
>At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 836
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 528 EVVKAGMSHGDLSIDAYTQV 587
E+V+ SHGDLS +AY QV
Sbjct: 230 EMVQDSSSHGDLSFNAYNQV 249
>At3g54540.1 68416.m06035 ABC transporter family protein similar to
ABC50 GI:10863747 from [Rattus norvegicus]
Length = 723
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 59 ALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQ 169
A + +PVP+N ++V ++ G++K AVVS ++
Sbjct: 209 AWRKIPVPKNIDVLLVEQEVVGDEKSALNAVVSANEE 245
>At1g33040.1 68414.m04068 nascent polypeptide-associated complex
(NAC) domain-containing protein similar to alpha-NAC,
non-muscle form [Mus musculus] GI:1666690; contains Pfam
profile PF01849: NAC domain
Length = 209
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +2
Query: 32 KQAKTSVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADA---DARYAKEQ 202
++ K+ + + + L + + D ++VV + + GE++DD VE + + +A+ ++ +
Sbjct: 7 EEEKSQIESIKEQLKLEKED-DVVVEDVKDGEEEDDDEDDEDVEVEGEGGNENAKQSRSE 65
Query: 203 EEKRAAELSRRSLAVQRARRV 265
++ R A L V RV
Sbjct: 66 KKSRKAVLKLGMKPVSDVSRV 86
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +2
Query: 26 LQKQAKTSVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADA---DARYAK 196
LQ++ K + L + R + EI + E++ ++KD + ED+ A D + K
Sbjct: 629 LQEKVKLEQSKVIDDLEMMRRNLEIELQERKEQDEKDLLDRMAQFEDKRMAELSDINHQK 688
Query: 197 EQEEKRAAELSRRSLAVQR 253
+ + E+ + A+Q+
Sbjct: 689 QALNREMEEMMSKRSALQK 707
>At1g10890.1 68414.m01251 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 592
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +2
Query: 14 ISHQLQKQAKTSVRNALQ-SLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADADARY 190
I + K+ + ++R ++ SL + EI+ +E G + + +E++ +A
Sbjct: 82 IEEETVKRVEEAIRKKVEESLQSEKIKMEILTLLEE-GRKRLNEEVAAQLEEEKEASLIE 140
Query: 191 AKEQEEKRAAELSRRS-LAVQRARRV 265
AKE+EE+ E R +A + +RV
Sbjct: 141 AKEKEEREQQEKEERERIAEENLKRV 166
>At5g22950.1 68418.m02683 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 229
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +2
Query: 11 QISHQLQKQAKTSVRNALQSLPVPRNDYEIVVPEQEAGEDKDDSAAVVSVEDQADAD--- 181
+I ++ K LPV I VP Q+A +++ A V+D+ + +
Sbjct: 162 EIDEEVDKVLTAIAGETAAELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEEELEEIR 221
Query: 182 ARYAK 196
AR AK
Sbjct: 222 ARLAK 226
>At1g27750.1 68414.m03391 ubiquitin system component Cue
domain-containing protein very low similarity to ASC-1
complex subunit P100 [Homo sapiens] GI:12061187;
contains Pfam profile PF02845: CUE domain
Length = 1973
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 164 PPRKRLRPNRPYLHQPLAPAPRF 96
PP + L P P+ H PL P P F
Sbjct: 879 PPPQALPPPLPHSHPPLVPPPPF 901
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,273,605
Number of Sequences: 28952
Number of extensions: 259687
Number of successful extensions: 1074
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -