Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1421
         (599 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   2.0  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   2.6  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   7.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 102 LRLDFQSSDPFYLEYLKRKYNML*REIDSFVIECHEIKH 218
           +RL   +S P  L+YL     +   EI+SF     +I++
Sbjct: 159 IRLTITASCPMNLQYLPMDRQLCHIEIESFGYTMRDIRY 197


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 595 PRLVASERSLNLGCGVAQFFIIRFKLCFQ 509
           P+L  +ER  NL C  A  ++  ++ C++
Sbjct: 233 PQLEVNERKENLTCQPAVPYVPFYRYCYR 261


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 459 AAKQEPCKPEPVPT 500
           A K +   PEPVPT
Sbjct: 385 ALKSDEIPPEPVPT 398


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -2

Query: 268  QPIVLIYIFFFFKLNI*CFIS 206
            +PI L+++FFF  + +  F++
Sbjct: 1324 EPIGLVFVFFFALILVIQFVA 1344


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -2

Query: 268  QPIVLIYIFFFFKLNI*CFIS 206
            +PI L+++FFF  + +  F++
Sbjct: 1324 EPIGLVFVFFFALILVIQFVA 1344


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -2

Query: 268  QPIVLIYIFFFFKLNI*CFIS 206
            +PI L+++FFF  + +  F++
Sbjct: 1324 EPIGLVFVFFFALILVIQFVA 1344


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -2

Query: 268  QPIVLIYIFFFFKLNI*CFIS 206
            +PI L+++FFF  + +  F++
Sbjct: 1324 EPIGLVFVFFFALILVIQFVA 1344


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,500
Number of Sequences: 336
Number of extensions: 2382
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)