Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1421
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    28   1.2  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    28   1.2  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    27   2.8  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   3.7  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    26   4.8  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     25   6.4  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   8.5  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    25   8.5  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 446  NEHEGGQAGTLQTRARANQG*LEAEFKSDDKELCHAATKIQASFRGHQARK 598
            NE+ G     +   +  N+  +E  F   +++ C AA   QASF G  + K
Sbjct: 1722 NENVGVDVELVSAISIDNETFIERNFTDTERKYCFAAPNPQASFAGRWSAK 1772


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 492 RARVCKVPAWPPSCSLISLFCVH 424
           +A+VC +P   PSCSL+ +   H
Sbjct: 315 KAKVCTLPIECPSCSLVLILSTH 337


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 486 EPVPTKADWKQSLNLMIKNCATPQPRF 566
           EP+    DW   L   IKN A P P+F
Sbjct: 222 EPLDVLQDWAAELFSPIKNKAVPIPKF 248


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -2

Query: 568  LNLGCGVAQFFIIRFKL---CFQSALVGTGS 485
            LNL CG A FF+ + +    CF+ AL+ + S
Sbjct: 1169 LNLTCGTASFFLNKLEKSLDCFEKALLVSDS 1199


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +1

Query: 283 KRKTKKTIKMNRRHRITRIKPITLRKRRTK--KA*SQKNRQPLKSRQRSVDTEQGNQ*A* 456
           KRK KK+   +++H+  + KP   + R +K  K  S+K +   K     ++ E+G + A 
Sbjct: 69  KRKEKKSKHEHKKHK--KDKPSADKDRISKKDKKKSKKGKSKTKEESIEINAEEGAKIA- 125

Query: 457 RRPSRNLANPS 489
            +P+   AN S
Sbjct: 126 -QPAIGSANAS 135


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 345 WLYSRYSVPSVHFDCFFRFSLP 280
           +L+   S+P VH  CF RF  P
Sbjct: 375 YLFKDRSLPKVHVHCFCRFPDP 396


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 595 PRLVASERSLNLGCGVAQFFIIRFKLCFQSALV 497
           P L  S  + NL   V   FII F +CF  A+V
Sbjct: 440 PPLKRSRITRNLNWNVYLNFIILFSMCFVCAVV 472


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 420 FRGHRTRKSMSMKAAKQ-EPCKPEPVPTK 503
           FR + T++   +  ++   PCK EP+P K
Sbjct: 78  FRQYSTKQFRDLNTSEALSPCKAEPIPYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,757
Number of Sequences: 5004
Number of extensions: 38353
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)