Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1421
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0409 - 21896478-21897005,21897098-21897292,21897405-218975... 34 0.100
04_04_0844 - 28637393-28638118,28638206-28638283,28638431-286386... 31 0.70
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112... 30 1.2
05_01_0177 + 1231679-1231753,1232259-1232546,1232608-1232685,123... 30 1.2
02_05_0543 + 29872168-29872767,29873089-29873115 29 2.2
12_01_0322 - 2451062-2451601,2451691-2451792,2452237-2452329,245... 29 2.8
04_04_0789 - 28068819-28068989,28069081-28069477,28069857-280700... 29 2.8
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983... 29 2.8
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 28 5.0
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817... 28 5.0
02_05_0550 + 29904733-29905596 28 6.6
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 27 8.7
>01_05_0409 -
21896478-21897005,21897098-21897292,21897405-21897542,
21897641-21897728,21897837-21897925,21898032-21898553
Length = 519
Score = 33.9 bits (74), Expect = 0.100
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +3
Query: 390 EQAATKIQAAFRGHRTRKSMS 452
+QAATK+Q F+GHRTR++++
Sbjct: 84 DQAATKVQKLFKGHRTRRNLA 104
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 539 ELCHAATKIQASFRGHQARK 598
EL AATK+Q F+GH+ R+
Sbjct: 82 ELDQAATKVQKLFKGHRTRR 101
>04_04_0844 -
28637393-28638118,28638206-28638283,28638431-28638607,
28639124-28639537
Length = 464
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 381 KSEEQAATKIQAAFRGHRTRKSM 449
K EE AA +IQAAFRG+ R+++
Sbjct: 121 KREEYAAVRIQAAFRGYLARRAL 143
>05_06_0212 +
26410330-26410419,26410562-26410846,26411005-26411208,
26411636-26411692,26411859-26412926
Length = 567
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 387 EEQAATKIQAAFRGHRTRKS 446
EEQAA K QAAFRG+ R++
Sbjct: 110 EEQAAVKAQAAFRGYLARRA 129
>05_01_0177 +
1231679-1231753,1232259-1232546,1232608-1232685,
1233458-1233673,1233862-1233981,1234079-1234804
Length = 500
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 375 GVKSEEQAATKIQAAFRGHRTRKSMS 452
GV EEQA KIQ AFRG+ ++ S
Sbjct: 102 GVSREEQATIKIQTAFRGYLLSENSS 127
>02_05_0543 + 29872168-29872767,29873089-29873115
Length = 208
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 387 EEQAATKIQAAFRGHRTRK-SMSMKAAKQEPCKPE 488
++ AA +IQAAFRGH R+ + +++ A E + E
Sbjct: 53 DDAAAARIQAAFRGHLVRRHAAAVRGADDEATRLE 87
>12_01_0322 -
2451062-2451601,2451691-2451792,2452237-2452329,
2452443-2452589,2453063-2453150,2453338-2453426,
2453698-2453763,2453962-2454076,2454269-2454462
Length = 477
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 375 GVKSEEQAATKIQAAFRGHRTRKSMSMKAAKQE 473
G E+ AATK+Q +R +RTR+ ++ A E
Sbjct: 30 GGGGEDGAATKLQKVYRSYRTRRKLADSAVVVE 62
>04_04_0789 -
28068819-28068989,28069081-28069477,28069857-28070009,
28070698-28070834
Length = 285
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 378 VKSEEQAATKIQAAFRGHRTRKS 446
+ EE AA IQA FRGH R++
Sbjct: 211 ISREEAAAATIQAGFRGHLARRA 233
>01_06_0496 -
29795490-29796638,29796811-29796870,29798168-29798371,
29798739-29798984,29799375-29799464
Length = 582
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 384 SEEQAATKIQAAFRGHRTRKS 446
SEE AA K QAAFRG+ R++
Sbjct: 96 SEELAAVKAQAAFRGYLARRA 116
>11_01_0315 -
2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 375 GVKSEEQAATKIQAAFRGHRTRKSMSMKAAKQE 473
G E+ AATK+Q +R +RTR+ ++ A E
Sbjct: 32 GGGGEDGAATKLQKMYRSYRTRRKLADTAVVVE 64
>06_03_0734 -
23980576-23980671,23980799-23981338,23981493-23981714,
23981791-23982144,23982460-23982546
Length = 432
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 384 SEEQAATKIQAAFRGHRTRKSMSMKAAKQEPC--KPEP-VPTKADWKQSLNLMI 536
S+ +AAT IQ+ FRG R+ + + C EP PT A S+ + +
Sbjct: 131 SQVEAATMIQSVFRGFMARRQLQKLKCSENGCCTTDEPRSPTTASIAASVEVQV 184
>02_05_0550 + 29904733-29905596
Length = 287
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 483 PEPVPTKADWKQSLNLMIKNCATPQPRFRLRSEATRRGR 599
PEP PT +WK +L + + + R+R+EA R R
Sbjct: 68 PEPEPT--EWKDALREALADATSDAAAARIRAEAERAVR 104
>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +1
Query: 286 RKTKKTIKMNRRHRITRIKPITLRKRRTKKA*SQKNRQPLKSRQRSVDTEQGNQ*A*RRP 465
++ KK K +RHR + P L K+R KK + ++ K ++ Q +P
Sbjct: 1429 KEKKKDKKDKKRHRDKKDDPEYLEKKRLKKEKKRMEKEKGKKQKEGEGVSSSEQKNTAKP 1488
Query: 466 SRNLANPSPCQP 501
S + S P
Sbjct: 1489 SDSQGTSSARPP 1500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,237,883
Number of Sequences: 37544
Number of extensions: 253349
Number of successful extensions: 812
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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