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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1421
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36252| Best HMM Match : IQ (HMM E-Value=2.7e-35)                    38   0.005
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.019
SB_32469| Best HMM Match : IQ (HMM E-Value=3.69943e-42)                31   0.71 
SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81)                    31   0.94 
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    31   0.94 
SB_39783| Best HMM Match : IQ (HMM E-Value=1e-15)                      30   1.6  
SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)                    29   2.2  
SB_46605| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)                    29   2.9  
SB_37552| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_46062| Best HMM Match : Somatomedin_B (HMM E-Value=3.8)             28   5.0  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)               27   8.8  

>SB_36252| Best HMM Match : IQ (HMM E-Value=2.7e-35)
          Length = 442

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +2

Query: 512 EAEFKSDDKELCHAATKIQASFRGHQARK 598
           E +   DD E+  AATKIQA+FRGH+ RK
Sbjct: 310 EVDIDLDDPEVNKAATKIQATFRGHKTRK 338



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +2

Query: 512 EAEFKSDDKELCHAATKIQASFRGHQARK 598
           E +   DD E+  AATKIQASFRGH+ R+
Sbjct: 72  EVDIDIDDPEVQKAATKIQASFRGHKTRE 100



 Score = 35.9 bits (79), Expect = 0.025
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +3

Query: 393 QAATKIQAAFRGHRTRKSM 449
           +AATKIQA FRGH+TRK M
Sbjct: 322 KAATKIQATFRGHKTRKEM 340



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = +3

Query: 390 EQAATKIQAAFRGHRTRKSMSMKAAKQEPCKPEPVPTK 503
           ++AATKIQA+FRGH+TR+   +K  KQ+  + E    K
Sbjct: 83  QKAATKIQASFRGHKTRE--QIKQDKQQKDEEEAAALK 118



 Score = 34.3 bits (75), Expect = 0.076
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +2

Query: 494 ANQG*LEAEFKSDDKELCHAATKIQASFRGHQARK 598
           AN    E +   +D ++  AA KIQASFRGH+AR+
Sbjct: 156 ANTNAEEVDIDLNDPDVQGAALKIQASFRGHKARE 190



 Score = 34.3 bits (75), Expect = 0.076
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +2

Query: 512 EAEFKSDDKELCHAATKIQASFRGHQARK 598
           E +   DD E+ +AA KIQASFR H++R+
Sbjct: 233 EVDIDLDDPEVQNAALKIQASFRSHKSRE 261



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +3

Query: 387 EEQAATKIQAAFRGHRTRKSMS--MKAAKQEPCKPE 488
           EE AA KIQ++FRGH+ R+ +   MK+  +E  + E
Sbjct: 112 EEAAALKIQSSFRGHKAREEVKELMKSKSRESTREE 147



 Score = 30.7 bits (66), Expect = 0.94
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 390 EQAATKIQAAFRGHRTRKSMSMKAAKQEPCKPE 488
           + AA KIQA+FR H++R+S+      +   K E
Sbjct: 244 QNAALKIQASFRSHKSRESVKSLTQNEAKAKTE 276



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +2

Query: 524 KSDDKELCHAATKIQASFRGHQARK 598
           + D++E   AA KIQ+SFRGH+AR+
Sbjct: 108 QKDEEEA--AALKIQSSFRGHKARE 130



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/25 (52%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = +3

Query: 396 AATKIQAAFRGHRTRKSM-SMKAAK 467
           AA KIQA+FRGH+ R+ +  +K++K
Sbjct: 175 AALKIQASFRGHKAREEVKKIKSSK 199


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +3

Query: 378  VKSEEQAATKIQAAFRGHRTRKSMSMK 458
            ++S+  AATKIQAA+RGH TR+ ++ K
Sbjct: 923  LESKNTAATKIQAAYRGHSTRQGLNWK 949



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 512  EAEFKSDDKELCHAATKIQASFRGHQARK 598
            +AE   + +    AATKIQA++RGH  R+
Sbjct: 916  QAELNEELESKNTAATKIQAAYRGHSTRQ 944


>SB_32469| Best HMM Match : IQ (HMM E-Value=3.69943e-42)
          Length = 416

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +3

Query: 378 VKSEEQAATKIQAAFRGHRTRK 443
           VK E +A+T IQA FRG++ RK
Sbjct: 257 VKKEVEASTTIQAGFRGYKVRK 278



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = +3

Query: 387 EEQAATKIQAAFRGHRTRKSM 449
           +++AAT IQA +RG+R+RK +
Sbjct: 237 QQKAATAIQAGYRGYRSRKKV 257



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 530 DDKELCH-AATKIQASFRGHQARK 598
           DD E C  AATKIQA + G+  RK
Sbjct: 117 DDGERCETAATKIQAGYHGYTCRK 140



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +3

Query: 387 EEQAATKIQAAFRGHRTRKSM------SMKAAKQEPCKPEPVPTKA 506
           E +AAT+IQA FRG++TR  +      S KA    P K      KA
Sbjct: 185 EVKAATQIQAHFRGYQTRARLQEGSGESKKAGSDSPKKVSGEQRKA 230



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 378 VKSEEQAATKIQAAFRGHRTRKSMSMKAAKQE 473
           +K + +AA KIQ+ +RG++ R  + M   +++
Sbjct: 142 IKHQNEAAMKIQSQYRGYKVRARLVMTEIERQ 173


>SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81)
          Length = 461

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 271 ILVRKRKTKKTIKMNRRHRITRIKPITLRKRRTKKA*SQKNRQ 399
           ++ +  K  K +KM R H++T  KP+  +K   K+   QK ++
Sbjct: 278 VIKKPIKLAKVMKMIRAHKLTPAKPVNKKKNDKKEQTQQKEKK 320


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +1

Query: 277 VRKRKTKKTIKMNRRHR-ITRIKPITLRKRRTK-KA*SQKNRQPLKSRQR 420
           +RKR  K   + NRR R + RI+    R+RR + K   ++ R+PL+ R+R
Sbjct: 358 LRKRARKLRRRRNRRRRRLRRIRRRRRRRRRRRRKLRRRRRRRPLRRRRR 407



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +1

Query: 304 IKMNRRHRITRIKPITLRKRRTKKA*SQKNRQPLKSRQRSVDTEQGNQ*A*RRPSR 471
           +KM  RHR   ++P+T +++R ++  +   R+  + R+R    ++  Q   RR  R
Sbjct: 649 VKMPLRHRFVTVRPVTRKRQRLRRRLTGWRRRIRRQRRRKRRRKRRRQRRSRRRRR 704



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 280 RKRKTKKTIKMNRRHRITRIKPITLRKRRTKKA*SQKNRQPLKSRQR 420
           RKR+ ++  +  RR R  R +    RKRR K    ++ RQ +  R+R
Sbjct: 691 RKRRRQRRSRRRRRRRRRRRRSQLRRKRRRKVRARRRKRQRILRRRR 737



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +1

Query: 277  VRKRKTKKTIKMNRRHRITRIKPITLRKRRTKKA*SQKNRQPLKSRQRSV 426
            +R+R+ K+  +  RR R    + +   KRR K+   ++ R+ ++  +R +
Sbjct: 1637 IRRRRRKRQARRRRRRRRRERRRLRRHKRRVKRRIKRRIRRRIRKARRRI 1686


>SB_39783| Best HMM Match : IQ (HMM E-Value=1e-15)
          Length = 371

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 396 AATKIQAAFRGHRTRKSMSMKAA 464
           AAT IQ+ FRG++TRK + +  A
Sbjct: 90  AATTIQSGFRGYKTRKQLELAKA 112


>SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)
          Length = 1060

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +3

Query: 387 EEQAATKIQAAFRGHRTRK 443
           EE AA KIQ++FRGH  RK
Sbjct: 323 EEVAALKIQSSFRGHFVRK 341



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 551 AATKIQASFRGHQARK 598
           AA KIQ+SFRGH  RK
Sbjct: 326 AALKIQSSFRGHFVRK 341


>SB_46605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +3

Query: 384 SEEQAATKIQAAFRGHRTRKSMSMKAAKQ 470
           S+E+A+  IQ+A+RG+ TRK   ++  +Q
Sbjct: 179 SDEEASVIIQSAYRGYLTRKRPDVQELRQ 207


>SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)
          Length = 942

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 449 EHEGGQAGTLQTRARANQG*LEAEFKSDDKELCHAATKIQASFRGHQARK 598
           + E   A T+Q   R        E+K + +++   A  IQ+ FRGHQ RK
Sbjct: 425 DREAKAAVTIQAATRGYFA--RKEYKCEREKMDSNARMIQSVFRGHQVRK 472


>SB_37552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 508 SALVGTGSGLQGSCLAAFMLIDFLVLCPRNAAWILVAAC 392
           S+L+    G Q   +++F  I F+VLC     WI +  C
Sbjct: 63  SSLIRLLQGRQSLSISSFWCIVFIVLCSDRDLWITLERC 101


>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 438  RKSMSMKAAKQEPCKPEPVPTKADWKQSLNLMIKNCATPQP 560
            RK    K   +EP  P+  P K+++   L L + +  +P+P
Sbjct: 890  RKKKMSKTPDEEPVVPKKKPQKSNFADQLKLAMWDIPSPEP 930


>SB_46062| Best HMM Match : Somatomedin_B (HMM E-Value=3.8)
          Length = 205

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 387 EEQAATKIQAAFRGHRTRKSMSMKAAKQEPCKPEP-VPTKADWKQSLNLMIKNCATPQPR 563
           +E    K Q    G  TRK  +    +Q+ C+P P  P  A     L   I++    QPR
Sbjct: 104 KEDEIWKNQCRNEGKMTRKCPAGCDIRQDECEPFPSAPLGA--AHPLPCTIRSAGAAQPR 161

Query: 564 FRLRSEA 584
            R+R  A
Sbjct: 162 LRMRPYA 168


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 387  EEQAATKIQAAFRGHRTRKS 446
            +  AAT IQ AFRG++ R+S
Sbjct: 2169 QHNAATAIQTAFRGYKARQS 2188


>SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)
          Length = 906

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +1

Query: 289 KTKKTIKMNRRHRITRIKPITLRKRRTKKA*SQKNRQPLKSRQRSVDTEQGNQ*A*RRPS 468
           K  + +  +R  R+   KP+T RK+   K   +  ++P + ++ +  T    Q   RR S
Sbjct: 228 KYVRLLTRDREERVKMGKPLTKRKKLAAKGKGKVKKEPKEEKENTEQTADSVQ---RRSS 284

Query: 469 R 471
           R
Sbjct: 285 R 285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,767,773
Number of Sequences: 59808
Number of extensions: 294613
Number of successful extensions: 1096
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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