BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1421 (599 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_36252| Best HMM Match : IQ (HMM E-Value=2.7e-35) 38 0.005 SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019 SB_32469| Best HMM Match : IQ (HMM E-Value=3.69943e-42) 31 0.71 SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81) 31 0.94 SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 31 0.94 SB_39783| Best HMM Match : IQ (HMM E-Value=1e-15) 30 1.6 SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061) 29 2.2 SB_46605| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9 SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37) 29 2.9 SB_37552| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8 SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0 SB_46062| Best HMM Match : Somatomedin_B (HMM E-Value=3.8) 28 5.0 SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8 SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17) 27 8.8 >SB_36252| Best HMM Match : IQ (HMM E-Value=2.7e-35) Length = 442 Score = 38.3 bits (85), Expect = 0.005 Identities = 17/29 (58%), Positives = 21/29 (72%) Frame = +2 Query: 512 EAEFKSDDKELCHAATKIQASFRGHQARK 598 E + DD E+ AATKIQA+FRGH+ RK Sbjct: 310 EVDIDLDDPEVNKAATKIQATFRGHKTRK 338 Score = 37.9 bits (84), Expect = 0.006 Identities = 17/29 (58%), Positives = 21/29 (72%) Frame = +2 Query: 512 EAEFKSDDKELCHAATKIQASFRGHQARK 598 E + DD E+ AATKIQASFRGH+ R+ Sbjct: 72 EVDIDIDDPEVQKAATKIQASFRGHKTRE 100 Score = 35.9 bits (79), Expect = 0.025 Identities = 15/19 (78%), Positives = 17/19 (89%) Frame = +3 Query: 393 QAATKIQAAFRGHRTRKSM 449 +AATKIQA FRGH+TRK M Sbjct: 322 KAATKIQATFRGHKTRKEM 340 Score = 35.5 bits (78), Expect = 0.033 Identities = 18/38 (47%), Positives = 26/38 (68%) Frame = +3 Query: 390 EQAATKIQAAFRGHRTRKSMSMKAAKQEPCKPEPVPTK 503 ++AATKIQA+FRGH+TR+ +K KQ+ + E K Sbjct: 83 QKAATKIQASFRGHKTRE--QIKQDKQQKDEEEAAALK 118 Score = 34.3 bits (75), Expect = 0.076 Identities = 17/35 (48%), Positives = 23/35 (65%) Frame = +2 Query: 494 ANQG*LEAEFKSDDKELCHAATKIQASFRGHQARK 598 AN E + +D ++ AA KIQASFRGH+AR+ Sbjct: 156 ANTNAEEVDIDLNDPDVQGAALKIQASFRGHKARE 190 Score = 34.3 bits (75), Expect = 0.076 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = +2 Query: 512 EAEFKSDDKELCHAATKIQASFRGHQARK 598 E + DD E+ +AA KIQASFR H++R+ Sbjct: 233 EVDIDLDDPEVQNAALKIQASFRSHKSRE 261 Score = 33.5 bits (73), Expect = 0.13 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%) Frame = +3 Query: 387 EEQAATKIQAAFRGHRTRKSMS--MKAAKQEPCKPE 488 EE AA KIQ++FRGH+ R+ + MK+ +E + E Sbjct: 112 EEAAALKIQSSFRGHKAREEVKELMKSKSRESTREE 147 Score = 30.7 bits (66), Expect = 0.94 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +3 Query: 390 EQAATKIQAAFRGHRTRKSMSMKAAKQEPCKPE 488 + AA KIQA+FR H++R+S+ + K E Sbjct: 244 QNAALKIQASFRSHKSRESVKSLTQNEAKAKTE 276 Score = 29.5 bits (63), Expect = 2.2 Identities = 14/25 (56%), Positives = 20/25 (80%) Frame = +2 Query: 524 KSDDKELCHAATKIQASFRGHQARK 598 + D++E AA KIQ+SFRGH+AR+ Sbjct: 108 QKDEEEA--AALKIQSSFRGHKARE 130 Score = 29.1 bits (62), Expect = 2.9 Identities = 13/25 (52%), Positives = 20/25 (80%), Gaps = 1/25 (4%) Frame = +3 Query: 396 AATKIQAAFRGHRTRKSM-SMKAAK 467 AA KIQA+FRGH+ R+ + +K++K Sbjct: 175 AALKIQASFRGHKAREEVKKIKSSK 199 >SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3464 Score = 36.3 bits (80), Expect = 0.019 Identities = 15/27 (55%), Positives = 22/27 (81%) Frame = +3 Query: 378 VKSEEQAATKIQAAFRGHRTRKSMSMK 458 ++S+ AATKIQAA+RGH TR+ ++ K Sbjct: 923 LESKNTAATKIQAAYRGHSTRQGLNWK 949 Score = 29.5 bits (63), Expect = 2.2 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +2 Query: 512 EAEFKSDDKELCHAATKIQASFRGHQARK 598 +AE + + AATKIQA++RGH R+ Sbjct: 916 QAELNEELESKNTAATKIQAAYRGHSTRQ 944 >SB_32469| Best HMM Match : IQ (HMM E-Value=3.69943e-42) Length = 416 Score = 31.1 bits (67), Expect = 0.71 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = +3 Query: 378 VKSEEQAATKIQAAFRGHRTRK 443 VK E +A+T IQA FRG++ RK Sbjct: 257 VKKEVEASTTIQAGFRGYKVRK 278 Score = 29.5 bits (63), Expect = 2.2 Identities = 11/21 (52%), Positives = 18/21 (85%) Frame = +3 Query: 387 EEQAATKIQAAFRGHRTRKSM 449 +++AAT IQA +RG+R+RK + Sbjct: 237 QQKAATAIQAGYRGYRSRKKV 257 Score = 29.1 bits (62), Expect = 2.9 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Frame = +2 Query: 530 DDKELCH-AATKIQASFRGHQARK 598 DD E C AATKIQA + G+ RK Sbjct: 117 DDGERCETAATKIQAGYHGYTCRK 140 Score = 28.3 bits (60), Expect = 5.0 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 6/46 (13%) Frame = +3 Query: 387 EEQAATKIQAAFRGHRTRKSM------SMKAAKQEPCKPEPVPTKA 506 E +AAT+IQA FRG++TR + S KA P K KA Sbjct: 185 EVKAATQIQAHFRGYQTRARLQEGSGESKKAGSDSPKKVSGEQRKA 230 Score = 27.9 bits (59), Expect = 6.6 Identities = 10/32 (31%), Positives = 21/32 (65%) Frame = +3 Query: 378 VKSEEQAATKIQAAFRGHRTRKSMSMKAAKQE 473 +K + +AA KIQ+ +RG++ R + M +++ Sbjct: 142 IKHQNEAAMKIQSQYRGYKVRARLVMTEIERQ 173 >SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81) Length = 461 Score = 30.7 bits (66), Expect = 0.94 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = +1 Query: 271 ILVRKRKTKKTIKMNRRHRITRIKPITLRKRRTKKA*SQKNRQ 399 ++ + K K +KM R H++T KP+ +K K+ QK ++ Sbjct: 278 VIKKPIKLAKVMKMIRAHKLTPAKPVNKKKNDKKEQTQQKEKK 320 >SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) Length = 2565 Score = 30.7 bits (66), Expect = 0.94 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Frame = +1 Query: 277 VRKRKTKKTIKMNRRHR-ITRIKPITLRKRRTK-KA*SQKNRQPLKSRQR 420 +RKR K + NRR R + RI+ R+RR + K ++ R+PL+ R+R Sbjct: 358 LRKRARKLRRRRNRRRRRLRRIRRRRRRRRRRRRKLRRRRRRRPLRRRRR 407 Score = 29.9 bits (64), Expect = 1.6 Identities = 15/56 (26%), Positives = 30/56 (53%) Frame = +1 Query: 304 IKMNRRHRITRIKPITLRKRRTKKA*SQKNRQPLKSRQRSVDTEQGNQ*A*RRPSR 471 +KM RHR ++P+T +++R ++ + R+ + R+R ++ Q RR R Sbjct: 649 VKMPLRHRFVTVRPVTRKRQRLRRRLTGWRRRIRRQRRRKRRRKRRRQRRSRRRRR 704 Score = 29.1 bits (62), Expect = 2.9 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +1 Query: 280 RKRKTKKTIKMNRRHRITRIKPITLRKRRTKKA*SQKNRQPLKSRQR 420 RKR+ ++ + RR R R + RKRR K ++ RQ + R+R Sbjct: 691 RKRRRQRRSRRRRRRRRRRRRSQLRRKRRRKVRARRRKRQRILRRRR 737 Score = 28.7 bits (61), Expect = 3.8 Identities = 12/50 (24%), Positives = 27/50 (54%) Frame = +1 Query: 277 VRKRKTKKTIKMNRRHRITRIKPITLRKRRTKKA*SQKNRQPLKSRQRSV 426 +R+R+ K+ + RR R + + KRR K+ ++ R+ ++ +R + Sbjct: 1637 IRRRRRKRQARRRRRRRRRERRRLRRHKRRVKRRIKRRIRRRIRKARRRI 1686 >SB_39783| Best HMM Match : IQ (HMM E-Value=1e-15) Length = 371 Score = 29.9 bits (64), Expect = 1.6 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = +3 Query: 396 AATKIQAAFRGHRTRKSMSMKAA 464 AAT IQ+ FRG++TRK + + A Sbjct: 90 AATTIQSGFRGYKTRKQLELAKA 112 >SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061) Length = 1060 Score = 29.5 bits (63), Expect = 2.2 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = +3 Query: 387 EEQAATKIQAAFRGHRTRK 443 EE AA KIQ++FRGH RK Sbjct: 323 EEVAALKIQSSFRGHFVRK 341 Score = 27.5 bits (58), Expect = 8.8 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = +2 Query: 551 AATKIQASFRGHQARK 598 AA KIQ+SFRGH RK Sbjct: 326 AALKIQSSFRGHFVRK 341 >SB_46605| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 263 Score = 29.1 bits (62), Expect = 2.9 Identities = 12/29 (41%), Positives = 21/29 (72%) Frame = +3 Query: 384 SEEQAATKIQAAFRGHRTRKSMSMKAAKQ 470 S+E+A+ IQ+A+RG+ TRK ++ +Q Sbjct: 179 SDEEASVIIQSAYRGYLTRKRPDVQELRQ 207 >SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37) Length = 942 Score = 29.1 bits (62), Expect = 2.9 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +2 Query: 449 EHEGGQAGTLQTRARANQG*LEAEFKSDDKELCHAATKIQASFRGHQARK 598 + E A T+Q R E+K + +++ A IQ+ FRGHQ RK Sbjct: 425 DREAKAAVTIQAATRGYFA--RKEYKCEREKMDSNARMIQSVFRGHQVRK 472 >SB_37552| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 124 Score = 28.7 bits (61), Expect = 3.8 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -2 Query: 508 SALVGTGSGLQGSCLAAFMLIDFLVLCPRNAAWILVAAC 392 S+L+ G Q +++F I F+VLC WI + C Sbjct: 63 SSLIRLLQGRQSLSISSFWCIVFIVLCSDRDLWITLERC 101 >SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2332 Score = 28.3 bits (60), Expect = 5.0 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +3 Query: 438 RKSMSMKAAKQEPCKPEPVPTKADWKQSLNLMIKNCATPQP 560 RK K +EP P+ P K+++ L L + + +P+P Sbjct: 890 RKKKMSKTPDEEPVVPKKKPQKSNFADQLKLAMWDIPSPEP 930 >SB_46062| Best HMM Match : Somatomedin_B (HMM E-Value=3.8) Length = 205 Score = 28.3 bits (60), Expect = 5.0 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Frame = +3 Query: 387 EEQAATKIQAAFRGHRTRKSMSMKAAKQEPCKPEP-VPTKADWKQSLNLMIKNCATPQPR 563 +E K Q G TRK + +Q+ C+P P P A L I++ QPR Sbjct: 104 KEDEIWKNQCRNEGKMTRKCPAGCDIRQDECEPFPSAPLGA--AHPLPCTIRSAGAAQPR 161 Query: 564 FRLRSEA 584 R+R A Sbjct: 162 LRMRPYA 168 >SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3172 Score = 27.5 bits (58), Expect = 8.8 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +3 Query: 387 EEQAATKIQAAFRGHRTRKS 446 + AAT IQ AFRG++ R+S Sbjct: 2169 QHNAATAIQTAFRGYKARQS 2188 >SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17) Length = 906 Score = 27.5 bits (58), Expect = 8.8 Identities = 16/61 (26%), Positives = 29/61 (47%) Frame = +1 Query: 289 KTKKTIKMNRRHRITRIKPITLRKRRTKKA*SQKNRQPLKSRQRSVDTEQGNQ*A*RRPS 468 K + + +R R+ KP+T RK+ K + ++P + ++ + T Q RR S Sbjct: 228 KYVRLLTRDREERVKMGKPLTKRKKLAAKGKGKVKKEPKEEKENTEQTADSVQ---RRSS 284 Query: 469 R 471 R Sbjct: 285 R 285 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,767,773 Number of Sequences: 59808 Number of extensions: 294613 Number of successful extensions: 1096 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 960 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1083 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1451595000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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