Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1421
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42847-3|AAA83605.2|  210|Caenorhabditis elegans Hypothetical pr...    31   0.83 
U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical p...    28   5.9  

>U42847-3|AAA83605.2|  210|Caenorhabditis elegans Hypothetical
           protein F39H12.3 protein.
          Length = 210

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +3

Query: 390 EQAATKIQAAFRGHRTR---KSMSMKAAKQEPCKPEPVPTKADWKQ-SLNLMIKNCATPQ 557
           + AATKIQAAF+GH  R   +   M        K +    K D K+ S+     +  TP+
Sbjct: 82  DTAATKIQAAFKGHLVRAHPEKYGMSTRTSSSEKLDSANNKKDQKRHSVGGYTIDVDTPE 141

Query: 558 PRFRLRSEATRRG 596
            R   + ++  RG
Sbjct: 142 DRAATKIQSEIRG 154



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 387 EEQAATKIQAAFRGHRTRKSMSMKAAKQE 473
           E++AATKIQ+  RG  TRK +  K  K++
Sbjct: 141 EDRAATKIQSEIRGFLTRKHVD-KMKKED 168



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 381 KSEEQAATKIQAAFRGHRTRKSM 449
           K +  AATKIQA  RG  TRK +
Sbjct: 166 KEDTDAATKIQAHIRGFLTRKHL 188



 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 515 AEFKSDDKELCHAATKIQASFRGHQAR 595
           AE +     +  AATKIQA+F+GH  R
Sbjct: 72  AEVERPASPMDTAATKIQAAFKGHLVR 98


>U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical
           protein F27C1.11 protein.
          Length = 1037

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 393 QAATKIQAAFRGHRTRK 443
           +AATKIQAA++G+  RK
Sbjct: 553 EAATKIQAAYKGYTVRK 569


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,316,862
Number of Sequences: 27780
Number of extensions: 225392
Number of successful extensions: 642
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)