Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1421
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.3  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   7.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.2  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 307 KMNRRHRITRIKPITLRKR 363
           KMNR HR+ R+  +    R
Sbjct: 368 KMNRMHRMNRVNRVNRMDR 386


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 468 AWPPSCSLISLFCVHGTLPGF 406
           A+P +C   +L  +  TLPG+
Sbjct: 17  AFPSACGKTNLAMMKPTLPGY 37


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 102 LRLDFQSSDPFYLEYLKRKYNML*REIDSFVIECHEIKH 218
           +RL   +S P  L+Y      +   EI+SF     +I++
Sbjct: 130 IRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 168


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 102 LRLDFQSSDPFYLEYLKRKYNML*REIDSFVIECHEIKH 218
           +RL   +S P  L+Y      +   EI+SF     +I++
Sbjct: 130 IRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 168


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 102 LRLDFQSSDPFYLEYLKRKYNML*REIDSFVIECHEIKH 218
           +RL   +S P  L+Y      +   EI+SF     +I++
Sbjct: 69  IRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 107


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 110 QSQFHTHTHTGFK 72
           Q + HT THTG K
Sbjct: 218 QLKVHTRTHTGEK 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,124
Number of Sequences: 438
Number of extensions: 2639
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)