Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1420
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    25   0.45 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    24   1.4  
AJ536347-1|CAD60438.1|   40|Tribolium castaneum putative Ash pro...    23   1.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.5  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    21   9.6  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   9.6  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 83  HRLTASHGLSSVGPRHTRHVSWARRHTQF-SAEPAVRFFNESVPAAIRRGR 232
           +RL    G SS   R TRH+   R HT+  +     R    + PA+ R G+
Sbjct: 254 NRLLVLAGTSSPSNRFTRHLIQRRTHTRHTTTSHNTRGTPRTTPASSRCGQ 304


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 598 GNVRARFNSSHAAHSPFEAHPTVNNR 521
           G+V  RF  +H  H PF    TVNN+
Sbjct: 468 GSVFVRF--THLQHQPFTYKITVNNQ 491


>AJ536347-1|CAD60438.1|   40|Tribolium castaneum putative Ash
           protein protein.
          Length = 40

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 622 RHHVRTNNGNVRARFNSSHAAHSPFEAHPTVNNRVLKI 509
           R+ V+ NNG    R +  +   + FE++    N+ LK+
Sbjct: 3   RNRVKVNNGFANLRQHIPNFIAAAFESNSRGGNKKLKV 40


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 64  HPXSLRAPPHRVSRPQLRRPPP 129
           HP     PPH  S P +  P P
Sbjct: 233 HPGLSPHPPHLSSHPAIVTPGP 254


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 64  HPXSLRAPPHRVSRPQLRRPPP 129
           HP     PPH  S P +  P P
Sbjct: 125 HPGLSPHPPHLSSHPAIVTPGP 146


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 220 YCCRNGFVEE 191
           YCCR  F+ E
Sbjct: 82  YCCRESFLRE 91


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 7   RQSPSRASPRTLRERRRVR 63
           +Q P+  + R  RER RV+
Sbjct: 81  QQQPASVARRNARERNRVK 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,585
Number of Sequences: 336
Number of extensions: 3239
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)