Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1420
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   0.48 
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    27   2.6  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    27   3.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   4.5  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    26   5.9  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.9  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   7.8  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 13   SPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPP 129
            SPS  SP    +      P S R PP   +RPQ+ +PPP
Sbjct: 1042 SPSALSPSVTPQLP----PVSSRLPPVSATRPQIPQPPP 1076


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 190 SYRGLSAELSVTASPADVPGMAGADGAEAVRR-GEAVRGDXLGDA 59
           +YR L     +   P  +P + G+DGA  + + GE V G   GD+
Sbjct: 43  NYRDLIITKGLYPLPLQLPVVPGSDGAGIIEKVGEDVEGFEKGDS 87


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 323 P*LGPLVPFVSHLRHNTTCIILQLILVFP**GRKLMRHFLNEFN 454
           P + PL  F S +++      LQ I V     RKLMR+ LNE+N
Sbjct: 535 PEMAPL--FTSIVKYLNGRFALQTIWVAEGLPRKLMRNILNEYN 576


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -3

Query: 190  SYRGLSAELSVTASPADVPGMAGADGAEAVR-RGEAVRG 77
            S   ++A+ +  ASPA+V  +AG+  A+A+R R  AVRG
Sbjct: 1173 SSTNVAAQANNNASPAEVNNLAGS-LADALRMRASAVRG 1210


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 34  RTLRERRRVRHPXSLRAPPHRVSR--PQLRRPPPYPARQLGSPSHSIQR*ARGTILQRIR 207
           R+LR    + H  SL   PHR+      +    P  +  L SP+H +QR +R TI +R  
Sbjct: 262 RSLR-LNELEHLESLARDPHRMVSLVDGMSNGSPEDSPLLVSPNHFLQRSSRTTI-RRTG 319

Query: 208 SCSNTTRKG 234
           +   T  +G
Sbjct: 320 ASIRTIHRG 328


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +1

Query: 13  SPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSI 168
           SP  AS   L+E + V  P S+R P  R +R   R       RQ     HS+
Sbjct: 57  SPDEAS--NLQELKFVSSPPSVRVPRSRRNRRNSRVDSEARKRQFDRVKHSV 106


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 43  RERRRVRHPXSLRAPPHRVSRPQLRRPPPY 132
           +  R++R P S   PP +  RP   R P Y
Sbjct: 116 KSERQMRPPKSYDFPPSQQVRPSTSRSPSY 145


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 10  QSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRR 120
           ++ SRAS R+ RE  R+++  SLR     +  P++RR
Sbjct: 346 RASSRASIRSTREENRLKYLDSLRERYKHI--PEIRR 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,782
Number of Sequences: 5004
Number of extensions: 49095
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)