Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1420
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 33 0.29
09_04_0377 + 17086775-17088310 32 0.50
04_04_0674 + 27173948-27174188,27174704-27175260,27175310-271753... 31 0.87
09_06_0183 - 21406474-21406636,21407412-21407956 31 1.2
01_06_0922 - 33022709-33023545 31 1.2
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 30 1.5
11_06_0187 - 21029511-21029857,21031444-21031739,21032270-210323... 30 2.0
12_02_1231 + 27208872-27208876,27209276-27209741 29 2.7
08_01_0876 - 8598664-8599374 29 2.7
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 29 2.7
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 29 2.7
01_01_0580 + 4305984-4307282,4308610-4308678 29 2.7
12_02_0063 + 13098519-13099585,13099759-13099906 29 3.5
02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619... 29 3.5
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 29 3.5
07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961 29 4.7
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 28 6.2
09_03_0051 + 11902322-11903125 28 6.2
08_01_1010 - 10215625-10216335,10216372-10216473 28 6.2
05_02_0116 + 6773659-6774437,6775103-6775298,6775381-6775565,677... 28 6.2
05_01_0192 + 1394342-1396645 28 6.2
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 28 6.2
06_03_0969 - 26413534-26413594,26415020-26415318 28 8.1
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 32.7 bits (71), Expect = 0.29
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Frame = +1
Query: 1 PERQSP-SRA--SPRTLRERRRVRH---PXSLR---APPHRVSRPQLRRPPPYPARQLGS 153
P R+SP SR SPR + +R P +R P R P RR P P R+L S
Sbjct: 267 PRRRSPPSRRVESPRCRPDSPPIRRRTAPSPIRHGGTPSRRPGSPIRRRSPSPPPRRLRS 326
Query: 154 PSHSIQR*ARGTILQR 201
P H R RG+ ++R
Sbjct: 327 PRHLSPRRDRGSPIRR 342
>09_04_0377 + 17086775-17088310
Length = 511
Score = 31.9 bits (69), Expect = 0.50
Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +1
Query: 7 RQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPY-PARQLGSPSHSIQR*AR 183
R+SPSR SP R RRR R P P+R R R P PY R+ SP H + R
Sbjct: 29 RRSPSR-SPSPRRNRRRDRSP-----SPYRSRRD--RSPSPYRDRRRQWSPYHRDR--GR 78
Query: 184 GTILQRIRSCSN-TTRKGGGGVAFG 255
+ R + R+GGGG G
Sbjct: 79 DVEREWARDRDHPAPRRGGGGAGAG 103
>04_04_0674 +
27173948-27174188,27174704-27175260,27175310-27175399,
27175475-27175714,27175801-27176022,27176124-27176433,
27176528-27176847,27176906-27177021,27177133-27177227,
27177331-27177407,27177520-27177615
Length = 787
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 67 PXSLRAPPHRVSRPQLRR-PPPYPARQLGSPSHSIQR*ARGTILQRIR 207
P LR PP R+ RP + R PPP +R L P R +I R+R
Sbjct: 492 PPPLRRPPPRLLRPDVSRLPPPVRSRPLKRPVDIRDRRPVMSIPDRVR 539
>09_06_0183 - 21406474-21406636,21407412-21407956
Length = 235
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Frame = +1
Query: 4 ERQSPSRASPRTLRERRRVRHPXSLRAPPHRVS------RPQLRRPPPYPAR 141
ER S +A+ R R R P S HRV RP L PPPYP R
Sbjct: 63 ERSSGKKAAQR--ERRGAYRRPRSTTVGIHRVGAEATPPRPSLVAPPPYPRR 112
>01_06_0922 - 33022709-33023545
Length = 278
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +1
Query: 7 RQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSP 156
R+SPS A+ RT +RR SL+ P RP RR P L P
Sbjct: 180 RRSPSPAAKRTPEQRRAASPAPSLQRKPPVPVRPSPRRVQEAPPSPLEPP 229
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 68 QXVSAHRLTASHGLSSVGPRHTRHVSWARRHTQFSAEPAVRFFNES 205
Q S+++ AS+G GP+ +R +S + TQ EPA+ +++S
Sbjct: 369 QSASSYQ-AASNGTHGTGPQFSRCISLTAQRTQLLPEPALDVYSKS 413
>11_06_0187 -
21029511-21029857,21031444-21031739,21032270-21032345,
21032714-21032836,21033200-21033228,21033823-21034328
Length = 458
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 5/22 (22%)
Frame = +1
Query: 106 PQLRRP-----PPYPARQLGSP 156
PQLR+P PP+PARQLG P
Sbjct: 39 PQLRQPLPLPLPPFPARQLGPP 60
>12_02_1231 + 27208872-27208876,27209276-27209741
Length = 156
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +1
Query: 88 PHRVSRPQLRR--PPPYPARQL--GSPSHSIQR*AR---GTILQRIRSCSNTTRKGGGGV 246
P + P RR PP P R L GS S S R R L +C+ ++ GGGGV
Sbjct: 47 PRKAPPPPARRLSVPPPPGRMLMAGSKSFSKARAVRPEDDPFLAAYLACTKSSNGGGGGV 106
Query: 247 A 249
A
Sbjct: 107 A 107
>08_01_0876 - 8598664-8599374
Length = 236
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 61 RHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR*ARGTILQRIRSCSNTTRKGGG 240
RH S +PPHR P RR P P R+ ++ +R + + S+T + G G
Sbjct: 11 RHRTS-SSPPHRCVEPLHRRAPLSPPRRCRCKNNRRRRAGGFVSPNLVEARSDTQQSGDG 69
Query: 241 G 243
G
Sbjct: 70 G 70
>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 49 RRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSP 156
RR+ P R PP+R R+P P P R+ SP
Sbjct: 1014 RRKPASPPRKRTPPNRRIESPRRQPDPSPRRRPDSP 1049
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPA 138
P +P+ A+ RR + RA P + PQ RPPP P+
Sbjct: 18 PPHPTPAAAAAAACCSRRNIS---CARAAPRALEAPQASRPPPRPS 60
>01_01_0580 + 4305984-4307282,4308610-4308678
Length = 455
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 19 SRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGS 153
SRA + RE P A P +VS ++ P P A+QLGS
Sbjct: 38 SRARLLSRREAMEAMEPHPFLADPPQVSSLRMMSPTPAHAQQLGS 82
>12_02_0063 + 13098519-13099585,13099759-13099906
Length = 404
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 28 SPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQ 144
SPR + + +L P V PQ PPPYPA Q
Sbjct: 152 SPRAAPDSVAHQESAALPPPQELVPPPQELAPPPYPAAQ 190
>02_02_0543 +
11360514-11361350,11361434-11361559,11361648-11361976,
11362078-11362861
Length = 691
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/48 (37%), Positives = 19/48 (39%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQ 144
P R S R PRT RR H PP + PPP P RQ
Sbjct: 2 PHRTSKMRRLPRTRSRRRTALHRRPPPLPPAIIIHKD--PPPPPPPRQ 47
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 25 ASPRTLRERRRVRHPXSLRAPPHRV-SRPQLRRPPPYP 135
A R L RR+ P SLR+ P R+ S PQ PPP P
Sbjct: 37 ARKRRLFSPRRLL-PTSLRSSPRRLPSPPQASHPPPAP 73
>07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961
Length = 221
Score = 28.7 bits (61), Expect = 4.7
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPS----HSI 168
P +P + PR + R P PHR P RR +L P+ H++
Sbjct: 6 PPPSAPPPSPPRAVFPSARCCLPS-----PHRFL-PSTRRKRLVTVAKLAFPAELKAHTL 59
Query: 169 QR*ARGTILQRIRSCSNTTRKGGGGVAF 252
G L + C TTR+G GG F
Sbjct: 60 HLVDNGGELMLVHHCFGTTRRGAGGGGF 87
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPP-HRV------SRPQLRRPPPYPAR 141
P R R R RRR P + +PP RV SR LRRPPP AR
Sbjct: 560 PRRLPHGRHGRRNPSRRRRPTPPLTPASPPLERVASKAGGSRGWLRRPPPEQAR 613
>09_03_0051 + 11902322-11903125
Length = 267
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +1
Query: 16 PSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPA 138
P A PRT R+R + APP S PQ PPP P+
Sbjct: 84 PDAAEPRTPTPRKR----SPVAAPP-AASEPQTPTPPPRPS 119
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPX-SLRAPPHRVSRPQLRRPPPYPARQLGSPSHS 165
P R + +P T RR P + PP R + P P P R+ SP+++
Sbjct: 95 PRRAASPDYTPSTPTPPRRAASPDYTPSTPPPRAASPDYTPSTPTPPRRAASPNYT 150
>05_02_0116 +
6773659-6774437,6775103-6775298,6775381-6775565,
6775746-6776079,6776174-6776378,6776692-6776834,
6777081-6777233
Length = 664
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 124 PPYPARQLGSPSHSIQR*ARGTILQRIRSCSNTTRKGGGGV 246
PP PAR+ G H + G ++ SCS++ GGGGV
Sbjct: 60 PPRPARRGGGDYHGVGE-GFGPLIYT--SCSSSAGGGGGGV 97
>05_01_0192 + 1394342-1396645
Length = 767
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +1
Query: 13 SPSRASPRTLRERRRVRH-PXSLRAPPHRVSRPQLRRPPPYPARQLGSPS 159
SPS+ SPR P S APP P L PP P +PS
Sbjct: 253 SPSKPSPRMATPSSPPPEAPVSSAAPPPASLNPMLPSPPQLPGVSTTTPS 302
>03_05_1096 -
30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 121 PPPYPARQLGSPSHSIQR*ARGTILQRIRSCSNTTRKGGGGVAFGDIFSPPSTRA 285
PPP P SP + ++ G R+ + GGGGVA SP + A
Sbjct: 24 PPPPPPGSSSSPLNRQKQGDPGQATPRLSAADEGGSVGGGGVAAASGSSPSAVSA 78
>06_03_0969 - 26413534-26413594,26415020-26415318
Length = 119
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +1
Query: 13 SPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSH 162
SP+ A+ R R + R P + R PP PQ + P PA GS H
Sbjct: 56 SPAAAARRRSRGTQARRPPAAARRPPAMARGPQAQARRP-PAMAQGSFCH 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,302,022
Number of Sequences: 37544
Number of extensions: 373206
Number of successful extensions: 1838
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1820
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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