Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1420
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.031
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 33 0.22
SB_38155| Best HMM Match : DUF414 (HMM E-Value=4.4) 30 1.6
SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 29 3.6
SB_24921| Best HMM Match : Pyr_redox (HMM E-Value=4.7e-15) 29 4.8
SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05) 28 6.3
SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15) 28 6.3
SB_20266| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12) 28 6.3
SB_50392| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_5276| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=1.1) 28 6.3
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0) 28 8.3
SB_43367| Best HMM Match : SAM_1 (HMM E-Value=0.085) 28 8.3
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 28 8.3
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 28 8.3
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086) 28 8.3
SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12) 28 8.3
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 35.9 bits (79), Expect = 0.031
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = +1
Query: 1 PERQSPSRASP---RTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQ 171
P R P R SP RT +RRR R +PP R P+ R P P R+ + S+
Sbjct: 1063 PRRSRPQRTSPSPRRTPEDRRRSRGSRRSPSPPKR--EPRRRSPSASPPRR-EARKRSLS 1119
Query: 172 R*ARGTILQRIRSCSNTTRKGGGGVAFGDIFSPPSTRA 285
R + + +R + RK V G+ +PP A
Sbjct: 1120 RSPKREVRRRGSPSPSEGRKKPVDVEMGEEEAPPCKAA 1157
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 19 SRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPS 159
+++ R+ R+ R + R+PP R P RRP P P R+ SPS
Sbjct: 538 TKSPSRSYTSPRQRRTSPNNRSPPPRRRSPSPRRPSPSPRRRSTSPS 584
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQ----LRRPPPYPARQLGSPSHSI 168
P R+SPS P RRR P PP RV R Q RR +P R + P +
Sbjct: 562 PRRRSPSPRRPSP-SPRRRSTSPSRKSPPPRRVHRHQDVVHPRRDVVHPRRDVVHPRQDV 620
>SB_38155| Best HMM Match : DUF414 (HMM E-Value=4.4)
Length = 361
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 77 SAHRLTASHGLSSVGPRHTRHVSWARRHTQFSAEPAVR 190
S +L A+H V P+H R S R +Q S EP ++
Sbjct: 258 SVEKLQAAHDKIKVKPKHRRPPSRVRTSSQVSTEPPIK 295
>SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 16 PSRASPRTLRER---RRVRHPXSLRAPPHRVSRPQLRRPPPYPARQ 144
P+ SP TL E+ + P SL H + L RPPP P ++
Sbjct: 101 PAPNSPLTLHEQFLSKTPLPPPSLEVSSHEAFQETLHRPPPSPVQE 146
>SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 91 HRVSRPQLRRPPPYPARQLGSPSHS 165
H+ RP+ RRPPP+ R+ G P S
Sbjct: 74 HQEERPRGRRPPPWWRRRRGPPRKS 98
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 88 PHRVSRPQLRRPPPYPARQLGSPSHSIQR 174
P + +P +R+P P+ + +G P H++Q+
Sbjct: 1145 PQQYRQPYIRQPKPHHIQAMGPPHHTMQQ 1173
>SB_24921| Best HMM Match : Pyr_redox (HMM E-Value=4.7e-15)
Length = 256
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -3
Query: 217 CCRNGFVEESYRGLSAELSVTASPADVPGMAGADGAEAVRRGEAVRGDXLGDARGD 50
C G+++ S ++A+LSV A+ P G E R G+ V L + D
Sbjct: 167 CTEQGYIDASGELIAADLSVWAAGVKAPAFVTTLGMETNRIGQLVVKPTLQSVQDD 222
>SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)
Length = 520
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 10 QSPSR-ASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPS 159
Q P R +SP+ + R P R+P +R S PQ R P PA SPS
Sbjct: 286 QLPKRPSSPQRPKSPNRPASPQRPRSP-NRPSSPQRPRSPNRPASTSQSPS 335
>SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)
Length = 979
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -3
Query: 205 GFVEESYRGLSAELSVTASPADVPGMAGADGAEAVRRGEAVRGDXLGDARGDARGE 38
G E+ G A + A A G A G EA+ GEA +A G+A GE
Sbjct: 646 GVAGEAVEGSEASKAGEAGEAVEAGEASEAG-EAIEAGEAGEASEASEAAGEATGE 700
>SB_20266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 31 PRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSI 168
P T+RER + +P + R RP + + P RQL S H I
Sbjct: 107 PPTVRERTKRINPRFALSRTRRTPRPDVYQSRPSQRRQLPSYQHLI 152
>SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)
Length = 655
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 7 RQSPSRASPRTLRERRRVRHPXSLRA---PPHRVSRPQLRRPPPYPARQLGSPSHSIQR* 177
R P R +P ++RR R P + P R +RP+ P YP ++ P S +
Sbjct: 531 RARPERINPELYPKQRRAR-PERINPELYPKQRRARPERINPELYPKQRRARPESSYESR 589
Query: 178 AR 183
+R
Sbjct: 590 SR 591
>SB_50392| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQL 147
P P R SP R R R+R P R Q+R+PP +P +L
Sbjct: 73 PTFPPPLRPSPNR-RWRARLREVRRSGNQPERQRSIQIRQPPAWPTHRL 120
>SB_5276| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=1.1)
Length = 886
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = -3
Query: 223 SYCCRNGFVEESYRGLSAELSVTA-------SPADVPGMAGADGAEA-VRRGEAVRGDXL 68
S CC G +E S S T+ SPA+ PG G+D +A V R V+G+
Sbjct: 462 SSCCSEGSIEYQEVSHSRHSSSTSEATSYQNSPANYPGDFGSDDTQASVARPIPVQGEKF 521
Query: 67 GDA 59
G A
Sbjct: 522 GPA 524
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHR------VSRPQLRRPP--PYPARQLGSP 156
P+RQ P ++ + ER + H + PP R S P L R P P+R +
Sbjct: 1354 PQRQRPEKSDSHSSGERYTIEHRGTDPVPPPRSDLTRHQSDPSLSRDTSRPSPSRDMTRS 1413
Query: 157 SHSIQR 174
S +I R
Sbjct: 1414 SETIPR 1419
>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
Length = 1596
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -3
Query: 220 YCCRNGFVEESYRGLSAELSVTASPADVPGMAG--ADGAEAVRRGEAVRGDXLGDARGDA 47
Y +G E+ A + A A G AG ++ EA GEA G+A G+A
Sbjct: 10 YAVDSGVASEASETGEASEASEAGEASETGEAGKASEAGEASETGEASEASETGEATGEA 69
Query: 46 RGECAVT 26
GE + T
Sbjct: 70 -GEASET 75
>SB_43367| Best HMM Match : SAM_1 (HMM E-Value=0.085)
Length = 325
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +1
Query: 28 SPRTLRERRRVRHPXSLRAP---PHRVSRPQLRRPPPYPARQ 144
S R L+ + R P L P P V RP PPP PA++
Sbjct: 107 SVRVLKSPLKDREPAPLPVPTMAPTPVPRPSDTNPPPLPAKR 148
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +1
Query: 4 ERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR 174
E + PSR+ + RE R+ RH PH S P PPP P + + S I R
Sbjct: 791 EERDPSRSPWASHREERKRRH------TPHEDSPPP-PPPPPPPPEEPSNKSRVIDR 840
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/60 (31%), Positives = 21/60 (35%)
Frame = +1
Query: 91 HRVSRPQLRRPPPYPARQLGSPSHSIQR*ARGTILQRIRSCSNTTRKGGGGVAFGDIFSP 270
HRV P R P P RQ S S AR I+ S G G +F P
Sbjct: 780 HRVVEPSFRAPKPASKRQQSSIDTSSSTFARPMAAPSIKCSSPGLTISGSFKPKGSVFKP 839
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +1
Query: 4 ERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR*AR 183
+R+ R S + R RH R+P + SR + R PP + R SI R R
Sbjct: 54 DRRGGKRRSFSRSKSRTPPRHRRRSRSPNKKHSRSKSRTPPRHRRRSRSPRRESIDRKRR 113
Query: 184 GT 189
+
Sbjct: 114 SS 115
>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
Length = 627
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYP 135
P Q + +S T+ E + HP S+ PP R S PQ PPP P
Sbjct: 129 PPLQEAAFSSRHTV-EVHGLAHP-SITQPPPRHSPPQTPVPPPPP 171
>SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12)
Length = 299
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 148 PADVPGMAGADGAEAVRRGEAVRGD 74
PA PG GADG + +R ++G+
Sbjct: 159 PAGPPGQPGADGKQGIRGPPGIKGE 183
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,563,854
Number of Sequences: 59808
Number of extensions: 405138
Number of successful extensions: 1454
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -