Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1420
         (696 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y17702-1|CAA76822.2|  260|Anopheles gambiae putative gVAG protei...    28   0.32 
AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase...    27   0.56 
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    27   0.56 
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    27   0.75 
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    25   1.7  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    25   1.7  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   5.3  
AJ010193-1|CAA09032.1|  684|Anopheles gambiae prophenoloxidase p...    23   9.2  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    23   9.2  

>Y17702-1|CAA76822.2|  260|Anopheles gambiae putative gVAG protein
           precursor protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 0.32
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 328 TRTTCSFRFPPSTQHNVYYFTINFSFSVI 414
           T+  CS  +    Q +VYYF  N+SF+ I
Sbjct: 193 TKVGCSMWYWKDGQMDVYYFVCNYSFTNI 221


>AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase
           subunit 2 protein.
          Length = 686

 Score = 27.1 bits (57), Expect = 0.56
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = -3

Query: 598 GNVRARFNSSHAAHSPFEAHPTVNN-----RVLKILINEGK*IDNRNKGLIL 458
           GNV A F  +H  H+PF    TVNN     R     I  G  +D RN GL +
Sbjct: 471 GNVFASF--THLQHAPFTFRLTVNNTSGRTRRGTCRIFIGPKVDERNTGLTM 520


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 0.56
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 16  PSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYP-ARQLGSPSHSIQR 174
           PSR +PR    R   R P S R+PP R  R +  RP  +P +R    P    +R
Sbjct: 252 PSRRNPRRRSPRSGGRWP-SCRSPPAR-RRSRSTRPTSWPRSRPTSKPKRLPRR 303


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 26.6 bits (56), Expect = 0.75
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 4   ERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQ 144
           ++Q   R  P  LR++R+ + P   +    +  RPQ +RP    ++Q
Sbjct: 444 QQQQGERYVPPQLRQQRQQQQPQQQQQQRPQQQRPQQQRPQQQRSQQ 490


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 105 ASAPSAPAIPGTSAGLAVTLNSALSPRYDSSTN 203
           AS P   A PG + GLA+ L++  S  + SST+
Sbjct: 260 ASYPRFIAGPGVAMGLAMVLDANASDYFCSSTS 292


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 105 ASAPSAPAIPGTSAGLAVTLNSALSPRYDSSTN 203
           AS P   A PG + GLA+ L++  S  + SST+
Sbjct: 260 ASYPRFIAGPGVAMGLAMVLDANASDYFCSSTS 292


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 181 GLSAELSVTASPADVPGMAGADGAEAVRRGEAVRGD 74
           GL+    +  +P   PG  G  G E  R  + +RGD
Sbjct: 734 GLAGPAGIPGAPG-APGEMGLRGFEGARGLQGLRGD 768


>AJ010193-1|CAA09032.1|  684|Anopheles gambiae prophenoloxidase
           protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 598 GNVRARFNSSHAAHSPFEAHPTVNNR 521
           GN+ A F  +H  H+P+     VNNR
Sbjct: 472 GNLFATF--THIQHAPYSYRIRVNNR 495


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 199  RIRSCSNTTRKGG 237
            ++R+C N TR+GG
Sbjct: 1533 QLRACQNATRQGG 1545


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 655,106
Number of Sequences: 2352
Number of extensions: 14153
Number of successful extensions: 52
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)