Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1420
(696 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 34 0.42
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 34 0.42
AK128837-1|BAC87637.1| 286|Homo sapiens protein ( Homo sapiens ... 33 1.3
BC035907-1|AAH35907.1| 308|Homo sapiens USP51 protein protein. 32 2.2
AJ583823-1|CAE47750.2| 711|Homo sapiens ubiquitin specific prot... 32 2.2
BC000136-1|AAH00136.1| 710|Homo sapiens Unknown (protein for IM... 31 3.0
AF000430-1|AAC23724.1| 736|Homo sapiens dynamin-like protein pr... 31 3.0
AB006965-1|BAA22193.1| 736|Homo sapiens Dnm1p/Vps1p-like protei... 31 3.0
AB058759-1|BAB47485.1| 1134|Homo sapiens KIAA1856 protein protein. 31 3.9
BC117689-1|AAI17690.1| 2011|Homo sapiens DOCK4 protein protein. 30 6.9
BC117688-1|AAI17689.1| 1966|Homo sapiens dedicator of cytokinesi... 30 6.9
AY233380-1|AAO73565.1| 1966|Homo sapiens DOCK4 protein. 30 6.9
AK098050-1|BAC05221.1| 279|Homo sapiens protein ( Homo sapiens ... 30 6.9
AC005047-1|AAS07431.1| 168|Homo sapiens unknown protein. 30 6.9
AB018259-1|BAA34436.3| 1388|Homo sapiens KIAA0716 protein protein. 30 6.9
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 34.3 bits (75), Expect = 0.42
Identities = 19/49 (38%), Positives = 21/49 (42%)
Frame = +1
Query: 10 QSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSP 156
+SPS PR R R P R P R P R PPP R+ SP
Sbjct: 291 RSPSHTRPRRRHRSRSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSP 339
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 34.3 bits (75), Expect = 0.42
Identities = 19/49 (38%), Positives = 21/49 (42%)
Frame = +1
Query: 10 QSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSP 156
+SPS PR R R P R P R P R PPP R+ SP
Sbjct: 291 RSPSHTRPRRRHRSRSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSP 339
>AK128837-1|BAC87637.1| 286|Homo sapiens protein ( Homo sapiens
cDNA FLJ46366 fis, clone TESTI4051388. ).
Length = 286
Score = 32.7 bits (71), Expect = 1.3
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +1
Query: 7 RQSPSRASPRTLRERRRVRHPXSLRAPPHRV--SRPQLRRPP-PYPAR 141
R++P RASPR R + P + RAPP R+ + P R PP PAR
Sbjct: 55 RRTPPRASPRRTPPRASLTRPPT-RAPPTRMPPTAPPTRTPPTASPAR 101
>BC035907-1|AAH35907.1| 308|Homo sapiens USP51 protein protein.
Length = 308
Score = 31.9 bits (69), Expect = 2.2
Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Frame = +1
Query: 22 RASPRTLRE-RRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR*AR-GTIL 195
R PR + R R R L APP +RP PPP P +R +R G+
Sbjct: 101 RRKPRPRPQPRARSRSQPGLSAPPPPPARPPPPPPPPPPPAPRPRAWRGSRRRSRPGSRP 160
Query: 196 QRIRSCSNTTRKGGGGVAFGD 258
Q RSCS G GD
Sbjct: 161 QTRRSCSGDLDGSGDPGGLGD 181
>AJ583823-1|CAE47750.2| 711|Homo sapiens ubiquitin specific
proteinase 51 protein.
Length = 711
Score = 31.9 bits (69), Expect = 2.2
Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Frame = +1
Query: 22 RASPRTLRE-RRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR*AR-GTIL 195
R PR + R R R L APP +RP PPP P +R +R G+
Sbjct: 101 RRKPRPRPQPRARSRSQPGLSAPPPPPARPPPPPPPPPPPAPRPRAWRGSRRRSRPGSRP 160
Query: 196 QRIRSCSNTTRKGGGGVAFGD 258
Q RSCS G GD
Sbjct: 161 QTRRSCSGDLDGSGDPGGLGD 181
>BC000136-1|AAH00136.1| 710|Homo sapiens Unknown (protein for
IMAGE:2984922) protein.
Length = 710
Score = 31.5 bits (68), Expect = 3.0
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 40 LRERRRVRHPXSLRAPPHRVSRPQLRRPPPY--PARQLGSPSHSIQR*ARGTILQRIRSC 213
+ E+RR R L P VSR + + P PA Q SP+ S + A G ++Q R
Sbjct: 486 IEEQRRNRLAREL---PSAVSRDKSSKVPSALAPASQEPSPAASAE--ADGKLIQDSRRE 540
Query: 214 SNTTRKGGGGVAFGDIFSPPST 279
+ GGGGV GD P+T
Sbjct: 541 TKNVASGGGGV--GDGVQEPTT 560
>AF000430-1|AAC23724.1| 736|Homo sapiens dynamin-like protein
protein.
Length = 736
Score = 31.5 bits (68), Expect = 3.0
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 40 LRERRRVRHPXSLRAPPHRVSRPQLRRPPPY--PARQLGSPSHSIQR*ARGTILQRIRSC 213
+ E+RR R L P VSR + + P PA Q SP+ S + A G ++Q R
Sbjct: 512 IEEQRRNRLAREL---PSAVSRDKSSKVPSALAPASQEPSPAASAE--ADGKLIQDSRRE 566
Query: 214 SNTTRKGGGGVAFGDIFSPPST 279
+ GGGGV GD P+T
Sbjct: 567 TKNVASGGGGV--GDGVQEPTT 586
>AB006965-1|BAA22193.1| 736|Homo sapiens Dnm1p/Vps1p-like protein
protein.
Length = 736
Score = 31.5 bits (68), Expect = 3.0
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 40 LRERRRVRHPXSLRAPPHRVSRPQLRRPPPY--PARQLGSPSHSIQR*ARGTILQRIRSC 213
+ E+RR R L P VSR + + P PA Q SP+ S + A G ++Q R
Sbjct: 512 IEEQRRNRLAREL---PSAVSRDKSSKVPSALAPASQEPSPAASAE--ADGKLIQDSRRE 566
Query: 214 SNTTRKGGGGVAFGDIFSPPST 279
+ GGGGV GD P+T
Sbjct: 567 TKNVASGGGGV--GDGVQEPTT 586
>AB058759-1|BAB47485.1| 1134|Homo sapiens KIAA1856 protein protein.
Length = 1134
Score = 31.1 bits (67), Expect = 3.9
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERR--RVRHPXSLRAPPHRVSRPQLRRPPPYP-ARQLGSPS 159
P Q+ + + RT+R+ R+ P R+PP SRP R P P P AR+ PS
Sbjct: 1005 PPPQTRTLPAARTMRQPPPPRLALPRRRRSPPRPPSRPARRGPRPTPQARRRPRPS 1060
>BC117689-1|AAI17690.1| 2011|Homo sapiens DOCK4 protein protein.
Length = 2011
Score = 30.3 bits (65), Expect = 6.9
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR*A 180
P R+ P ++ ER +R P L PH +S P PP P + L + S ++ A
Sbjct: 1937 PVRKESKTPPPYSVYERT-LRRPIPL---PHSLSIPVTSEPPALPPKPLAARSSHLENGA 1992
Query: 181 RGT 189
R T
Sbjct: 1993 RRT 1995
>BC117688-1|AAI17689.1| 1966|Homo sapiens dedicator of cytokinesis 4
protein.
Length = 1966
Score = 30.3 bits (65), Expect = 6.9
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR*A 180
P R+ P ++ ER +R P L PH +S P PP P + L + S ++ A
Sbjct: 1892 PVRKESKTPPPYSVYERT-LRRPVPL---PHSLSIPVTSEPPALPPKPLAARSSHLENGA 1947
Query: 181 RGT 189
R T
Sbjct: 1948 RRT 1950
>AY233380-1|AAO73565.1| 1966|Homo sapiens DOCK4 protein.
Length = 1966
Score = 30.3 bits (65), Expect = 6.9
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR*A 180
P R+ P ++ ER +R P L PH +S P PP P + L + S ++ A
Sbjct: 1892 PVRKESKTPPPYSVYERT-LRRPVPL---PHSLSIPVTSEPPALPPKPLAARSSHLENGA 1947
Query: 181 RGT 189
R T
Sbjct: 1948 RRT 1950
>AK098050-1|BAC05221.1| 279|Homo sapiens protein ( Homo sapiens
cDNA FLJ40731 fis, clone TKIDN2000521. ).
Length = 279
Score = 30.3 bits (65), Expect = 6.9
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR*A 180
P R+ P ++ ER +R P L PH +S P PP P + L + S ++ A
Sbjct: 205 PVRKESKTPPPYSVYERT-LRRPVPL---PHSLSIPVTSEPPALPPKPLAARSSHLENGA 260
Query: 181 RGT 189
R T
Sbjct: 261 RRT 263
>AC005047-1|AAS07431.1| 168|Homo sapiens unknown protein.
Length = 168
Score = 30.3 bits (65), Expect = 6.9
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR*A 180
P R+ P ++ ER +R P L PH +S P PP P + L + S ++ A
Sbjct: 94 PVRKESKTPPPYSVYERT-LRRPVPL---PHSLSIPVTSEPPALPPKPLAARSSHLENGA 149
Query: 181 RGT 189
R T
Sbjct: 150 RRT 152
>AB018259-1|BAA34436.3| 1388|Homo sapiens KIAA0716 protein protein.
Length = 1388
Score = 30.3 bits (65), Expect = 6.9
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR*A 180
P R+ P ++ ER +R P L PH +S P PP P + L + S ++ A
Sbjct: 1314 PVRKESKTPPPYSVYERT-LRRPVPL---PHSLSIPVTSEPPALPPKPLAARSSHLENGA 1369
Query: 181 RGT 189
R T
Sbjct: 1370 RRT 1372
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,678,030
Number of Sequences: 237096
Number of extensions: 1819371
Number of successful extensions: 6347
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6307
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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