Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1420
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 31 1.0
AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical... 31 1.0
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical... 31 1.0
Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z82266-1|CAB05178.2| 626|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z93379-3|CAB07590.1| 282|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z78013-6|CAB01421.1| 205|Caenorhabditis elegans Hypothetical pr... 28 5.5
U88310-3|AAB42337.1| 608|Caenorhabditis elegans Hypothetical pr... 28 7.3
U88310-2|AAB42338.2| 635|Caenorhabditis elegans Hypothetical pr... 28 7.3
U49941-4|AAP46282.1| 271|Caenorhabditis elegans Hypothetical pr... 28 7.3
U49941-3|AAP46281.1| 451|Caenorhabditis elegans Hypothetical pr... 28 7.3
U49941-2|AAB53873.1| 757|Caenorhabditis elegans Hypothetical pr... 28 7.3
U40942-2|AAC47072.2| 201|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 27 9.7
AF000198-9|AAB53057.4| 684|Caenorhabditis elegans Hypothetical ... 27 9.7
AC006633-5|AAO21429.1| 506|Caenorhabditis elegans Prion-like-(q... 27 9.7
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q... 27 9.7
>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical
protein T21C9.6 protein.
Length = 1215
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -1
Query: 456 LLNSFKKWRINFRPYYGKTKINCKIIHVVLCRRW 355
L N F+KWRINFR Y K N H V+ W
Sbjct: 124 LRNPFRKWRINFRGYLNDAKGNS---HFVILSGW 154
>Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLR--APPHRVSRPQLRRPPPYPAR 141
P R S + R RE R R P +R PP R + P+ P PA+
Sbjct: 237 PRRTSSPKRDARPAREIRDSREPREVRRSPPPRRAASPRKASSPSAPAK 285
>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLR--APPHRVSRPQLRRPPPYPAR 141
P R S + R RE R R P +R PP R + P+ P PA+
Sbjct: 237 PRRTSSPKRDARPAREIRDSREPREVRRSPPPRRAASPRKASSPSAPAK 285
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +1
Query: 7 RQSPSRA-SPRTLRE---RRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHS 165
R+SPS++ SP RE RR R P + ++PP + PP P R+ SPS S
Sbjct: 391 RRSPSKSRSPAPKREIPPARRRRSPSASKSPPAPKRAKSRSKSPPAPRRR-RSPSQS 446
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 7 RQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSP 156
R+SPS + R+ R RR R P R P+ RR P +R P
Sbjct: 467 RRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPSSSSRSRSPP 516
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPAR 141
P R+ A+PR + +R R P R+P S + R PPP P R
Sbjct: 478 PRRRRSPAAAPRRRQSPQRRRSPRRRRSPS---SSSRSRSPPPPPRR 521
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +1
Query: 7 RQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHS 165
R+SPS AS RRR R P ++P + ++ + + PP PAR+ SPS S
Sbjct: 305 RRSPS-ASKSPPPARRR-RSPSQSKSPAPKRAKSRSKSPPA-PARRRRSPSAS 354
Score = 27.9 bits (59), Expect = 7.3
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Frame = +1
Query: 7 RQSPSRASPRTLRERR-----RVRHPXSLRAP---PHRVSRPQLRRPPPYPARQLGSPSH 162
R+SPS+ SP+ R RR + R P R+P P R PQ RR P R+ SPS
Sbjct: 454 RRSPSK-SPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSP----RRRRSPSS 508
Query: 163 S 165
S
Sbjct: 509 S 509
>AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLR--APPHRVSRPQLRRPPPYPAR 141
P R S + R RE R R P +R PP R + P+ P PA+
Sbjct: 237 PRRTSSPKRDARPAREIRDSREPREVRRSPPPRRAASPRKASSPSAPAK 285
>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLR--APPHRVSRPQLRRPPPYPAR 141
P R S + R RE R R P +R PP R + P+ P PA+
Sbjct: 237 PRRTSSPKRDARPAREIRDSREPREVRRSPPPRRAASPRKASSPSAPAK 285
>Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.2 protein.
Length = 306
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 181 GLSAELSVTASPADVPGMAGADGAEAVRRGEAVRG-DXLGDARGDARGECA 32
G+ E++V A PA PG AGA GA+ G D GDA + A
Sbjct: 222 GVVEEVAVPAGPAGAPGPAGAPGADGAAGAPGQPGQDGPQGPAGDAGSDGA 272
>Z82266-1|CAB05178.2| 626|Caenorhabditis elegans Hypothetical
protein F23B2.3 protein.
Length = 626
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 99 LTASAPSAPAIPGTSAGLAVTLNSALSPRYDSST 200
L+ S + PG AGL++TL++ L ++DSST
Sbjct: 256 LSKSPMNKQTEPGIRAGLSLTLDANLDEQFDSST 289
>Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical
protein F32B4.4b protein.
Length = 663
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 22 RASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGS 153
+ SP +RR P RAP + SR + PP P RQ G+
Sbjct: 296 QVSPDRSEQRRHRDEPPPRRAPQEQPSRRRGASPPEPPRRQEGA 339
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 4 ERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGS 153
E+ + R+S T RRR P HR P R P P+R+ G+
Sbjct: 278 EQYARERSSSTTTSSRRRQVSPDRSEQRRHRDEPPPRRAPQEQPSRRRGA 327
>Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical
protein F32B4.4a protein.
Length = 771
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 22 RASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGS 153
+ SP +RR P RAP + SR + PP P RQ G+
Sbjct: 404 QVSPDRSEQRRHRDEPPPRRAPQEQPSRRRGASPPEPPRRQEGA 447
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 4 ERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGS 153
E+ + R+S T RRR P HR P R P P+R+ G+
Sbjct: 386 EQYARERSSSTTTSSRRRQVSPDRSEQRRHRDEPPPRRAPQEQPSRRRGA 435
>Z93379-3|CAB07590.1| 282|Caenorhabditis elegans Hypothetical
protein F21H7.4 protein.
Length = 282
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +1
Query: 19 SRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYP 135
S +S + E R P PPHR RP RPPP P
Sbjct: 64 SSSSSSSSEEHGHHRPPHRPHRPPHRPHRPP--RPPPRP 100
>Z78013-6|CAB01421.1| 205|Caenorhabditis elegans Hypothetical
protein F15B9.2 protein.
Length = 205
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +1
Query: 115 RRPPPYPARQLGSPSHSIQR*ARGTILQRIRSCSNTTRKGGGGVAFG 255
R PPY ++L S I + R QR+RS GGGG+ G
Sbjct: 146 RSLPPYAQQELQSTFPQIFQFMRQMREQRLRSMMGGFFGGGGGIGMG 192
>U88310-3|AAB42337.1| 608|Caenorhabditis elegans Hypothetical
protein C24G7.1 protein.
Length = 608
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 132 PGTSAGLAVTLNSALSPRYDSS 197
PG AGLA+TL++ L ++D S
Sbjct: 264 PGIQAGLAITLDAHLEEQFDGS 285
>U88310-2|AAB42338.2| 635|Caenorhabditis elegans Hypothetical
protein C24G7.2 protein.
Length = 635
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 132 PGTSAGLAVTLNSALSPRYDSS 197
PG AGLA+TL++ L ++D S
Sbjct: 279 PGIQAGLAITLDAHLEEQFDGS 300
>U49941-4|AAP46282.1| 271|Caenorhabditis elegans Hypothetical
protein K10B3.6c protein.
Length = 271
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 301 KFL*SIYSLTRTTCSFRFPPSTQHNVYYFTINFSFSVI 414
+F S+YSL C+ FP + ++ TI+FS S++
Sbjct: 17 RFSFSLYSLYILFCAGAFPIPRSPSSFFLTISFSSSIL 54
>U49941-3|AAP46281.1| 451|Caenorhabditis elegans Hypothetical
protein K10B3.6b protein.
Length = 451
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 301 KFL*SIYSLTRTTCSFRFPPSTQHNVYYFTINFSFSVI 414
+F S+YSL C+ FP + ++ TI+FS S++
Sbjct: 17 RFSFSLYSLYILFCAGAFPIPRSPSSFFLTISFSSSIL 54
>U49941-2|AAB53873.1| 757|Caenorhabditis elegans Hypothetical
protein K10B3.6a protein.
Length = 757
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 301 KFL*SIYSLTRTTCSFRFPPSTQHNVYYFTINFSFSVI 414
+F S+YSL C+ FP + ++ TI+FS S++
Sbjct: 17 RFSFSLYSLYILFCAGAFPIPRSPSSFFLTISFSSSIL 54
>U40942-2|AAC47072.2| 201|Caenorhabditis elegans Hypothetical
protein K02E10.6 protein.
Length = 201
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +3
Query: 516 RTRLLTVGWASNGECAACDELNRARTLPLFVRTW*RICYNIERVAMYITVRMLMLTR 686
RTR L G+A++G+ A DE+ R L + +NI ++ MY + LTR
Sbjct: 37 RTRSLNAGYATDGDPAINDEVYRIFMLTILDG------FNIFKIKMYNDRSFIYLTR 87
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 73 SLRAPPHRVSRPQLRRPPPYPARQLGSPSHS 165
+L APP + Q PP +P +QLG P+ S
Sbjct: 358 TLGAPPPNLMALQQSLPPGFPNQQLGLPNLS 388
>AF000198-9|AAB53057.4| 684|Caenorhabditis elegans Hypothetical
protein T28F2.7 protein.
Length = 684
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 132 PGTSAGLAVTLNSALSPRYDSSTN 203
PG +AGL + L+S L ++DS T+
Sbjct: 280 PGIAAGLQIILDSHLEEQFDSETD 303
>AC006633-5|AAO21429.1| 506|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform b protein.
Length = 506
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 13 SPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR 174
SP R P + R + + R+ H +RP++ PPP + G PS S+ R
Sbjct: 305 SPRRFVPASAIPDLRAANAAA-RSSMHNRNRPRMYNPPPAVSHSQG-PSRSVSR 356
>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform a protein.
Length = 1128
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 13 SPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR 174
SP R P + R + + R+ H +RP++ PPP + G PS S+ R
Sbjct: 305 SPRRFVPASAIPDLRAANAAA-RSSMHNRNRPRMYNPPPAVSHSQG-PSRSVSR 356
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,261,070
Number of Sequences: 27780
Number of extensions: 296952
Number of successful extensions: 1085
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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