Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1420
(696 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.026
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.026
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 31 0.55
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 31 0.55
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 31 0.73
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 31 0.96
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 31 0.96
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 30 1.7
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 30 1.7
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 29 2.2
At5g01270.1 68418.m00036 double-stranded RNA-binding domain (DsR... 28 5.1
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 28 5.1
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 28 5.1
At4g17330.1 68417.m02600 agenet domain-containing protein contai... 28 5.1
At1g24851.1 68414.m03110 hypothetical protein 28 5.1
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 28 6.8
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 27 9.0
At4g31890.1 68417.m04532 armadillo/beta-catenin repeat family pr... 27 9.0
At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomerase / F... 27 9.0
At3g18770.1 68416.m02382 expressed protein 27 9.0
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 27 9.0
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 27 9.0
At1g36970.1 68414.m04608 hypothetical protein 27 9.0
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.9 bits (79), Expect = 0.026
Identities = 34/85 (40%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +1
Query: 1 PER-QSPSRASPRTLRERRRVRHPXSLRAPPHRVSRP-QLRRPPPYPARQLGSPSHS-IQ 171
P R +SPS PR R R P +R P R P LRR P P R P S I+
Sbjct: 266 PSRGRSPSSPPPRRYRSPPR-GSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSPIR 324
Query: 172 R*ARGTILQ--RIRSCSNTTRKGGG 240
R +R I + R RS S + RKG G
Sbjct: 325 RRSRSPIRRPGRSRSSSISPRKGRG 349
Score = 31.9 bits (69), Expect = 0.42
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = +1
Query: 13 SPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR*ARGTI 192
SPSR + RR R P R P R+ +RR P P R+ P ++ R +
Sbjct: 265 SPSRGRSPSSPPPRRYRSPP--RGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP 322
Query: 193 LQRIRSCSNTTRKG 234
++R RS S R G
Sbjct: 323 IRR-RSRSPIRRPG 335
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.9 bits (79), Expect = 0.026
Identities = 34/85 (40%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +1
Query: 1 PER-QSPSRASPRTLRERRRVRHPXSLRAPPHRVSRP-QLRRPPPYPARQLGSPSHS-IQ 171
P R +SPS PR R R P +R P R P LRR P P R P S I+
Sbjct: 273 PSRGRSPSSPPPRRYRSPPR-GSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSPIR 331
Query: 172 R*ARGTILQ--RIRSCSNTTRKGGG 240
R +R I + R RS S + RKG G
Sbjct: 332 RRSRSPIRRPGRSRSSSISPRKGRG 356
Score = 31.9 bits (69), Expect = 0.42
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = +1
Query: 13 SPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR*ARGTI 192
SPSR + RR R P R P R+ +RR P P R+ P ++ R +
Sbjct: 272 SPSRGRSPSSPPPRRYRSPP--RGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP 329
Query: 193 LQRIRSCSNTTRKG 234
++R RS S R G
Sbjct: 330 IRR-RSRSPIRRPG 342
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 31.5 bits (68), Expect = 0.55
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +1
Query: 13 SPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGS 153
SPSR R+ R P S PP + S P R PPP PA++ S
Sbjct: 149 SPSRPPKRSRGPPRPPTRPKS--PPPRKSSFPPSRSPPPPPAKKNAS 193
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 31.5 bits (68), Expect = 0.55
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +1
Query: 13 SPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGS 153
SPSR R+ R P S PP + S P R PPP PA++ S
Sbjct: 149 SPSRPPKRSRGPPRPPTRPKS--PPPRKSSFPPSRSPPPPPAKKNAS 193
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 31.1 bits (67), Expect = 0.73
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 RQSPSRASPRTLRERRRVRHPX---SLRAPPHRVSRP--QLRRPPPYPARQLGSPSHSIQ 171
R+S SR+ R+L RRR H R+P R RP + RR P P+R+ SPS +
Sbjct: 259 RRSRSRSVRRSLSPRRRRIHSPFRSRSRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPPAR 318
Query: 172 R 174
R
Sbjct: 319 R 319
Score = 29.5 bits (63), Expect = 2.2
Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = +1
Query: 7 RQSPS----RASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR 174
RQSP+ R SP RRR P + R + R P P PARQ SPS +R
Sbjct: 301 RQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTP-PARQRRSPSPPARR 359
Query: 175 *ARGTILQRIRSCSNTTRK 231
+R RS S R+
Sbjct: 360 HRSPPPARRRRSPSPPARR 378
Score = 28.7 bits (61), Expect = 3.9
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Frame = +1
Query: 7 RQSPS-----RASPRTLRERRRVRHPXSLRAPPHRVSRP--QLRRPPPYPARQLGSPSHS 165
R+SPS R SP RRR P + R HR P + RR P PAR+ SP +
Sbjct: 310 RRSPSPPARRRRSPSPPARRRRSPSPPARR---HRSPTPPARQRRSPSPPARRHRSPPPA 366
Query: 166 IQR*ARGTILQRIRSCSNTTRK 231
+R + +R RS S R+
Sbjct: 367 RRRRSPSPPARRRRSPSPPARR 388
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 7 RQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPP 126
R+S +S +RRR R P S R+P S P L R P
Sbjct: 591 RRSRRSSSASRSPDRRRRRSPSSSRSPSRSRSPPVLHRSP 630
Score = 27.9 bits (59), Expect = 6.8
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR-* 177
P + R SP R R P R P +R RR P PAR+ SPS +R
Sbjct: 343 PTPPARQRRSPSPPARRHRSPPPARRRRSPSPPARR--RRSPSPPARRRRSPSPLYRRNR 400
Query: 178 ARGTILQRIRSCSNTTRKG 234
+ + +R RS S ++G
Sbjct: 401 SPSPLYRRNRSRSPLAKRG 419
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 30.7 bits (66), Expect = 0.96
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +1
Query: 1 PERQSPSRASP--RTLRERRRVRHPX----SLRAPPHRVSRPQLRRPPPYPARQLGSPSH 162
PER SP R P R ++R R R+P S R+P R P RR PP R+ S S
Sbjct: 434 PER-SPPRHWPDRRNFQDRNRDRYPSNRSYSERSPRGRFRSPPRRRSPPRYNRRRRSTSR 492
Query: 163 S 165
S
Sbjct: 493 S 493
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 7 RQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPAR 141
R+SP+ R+ R R P R+P R R R PPPY AR
Sbjct: 134 RKSPTYGGRRSYSPRARSPPPPRRRSPSPR-GRNYSRSPPPYRAR 177
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLR----APPHRVSRPQLRRPPPYPARQLGSPSHS 165
PE + SPR R R P R +PP R + R PPPY R+ S S S
Sbjct: 255 PENGAVRNRSPRKGRGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRS 313
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLR----APPHRVSRPQLRRPPPYPARQLGSPSHS 165
PE + SPR R R P R +PP R + R PPPY R+ S S S
Sbjct: 255 PENGAVRNRSPRKGRGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRS 313
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 4 ERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSI 168
E+ + S+ + +T+RE HP +LR H + Q R P + A QL S S ++
Sbjct: 270 EKMAKSKHNFKTIREITASYHPLALR---HFLMSAQYRSPLSFTASQLESSSEAL 321
>At5g01270.1 68418.m00036 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 771
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 80 AHRLTASHGLSSVGPRHTRHVSWARRHTQFSAEPAVRFFNESVPAAIRRGREAEA 244
AH+ A + L S+ ++ HV+ R T+ E F ES +G E EA
Sbjct: 709 AHQQAAENALRSLAEKYVAHVAPLARETEKGPENDNGFLWESSEDVSNKGLEEEA 763
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 1 PERQSPSRA-SPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLG 150
P+R+ SR+ SPR R R R R R+ P SR + P P+R G
Sbjct: 5 PQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRG 55
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 1 PERQSPSRA-SPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLG 150
P+R+ SR+ SPR R R R R R+ P SR + P P+R G
Sbjct: 5 PQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRG 55
>At4g17330.1 68417.m02600 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 1058
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 97 VSRPQLRRPPPYPARQLGSPSHSIQR-*ARGTILQRIRSCSNTTRKG-GGGVAF 252
+SRP+ +P P P + G+ + I R +R T + S + +G G GV+F
Sbjct: 905 ISRPKTFKPAPKPKEKPGATARIIPRKDSRNTTASDMESDESAENRGPGSGVSF 958
>At1g24851.1 68414.m03110 hypothetical protein
Length = 258
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 16 PSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHS 165
PS+A+ + R ++ V P S + H + PP YPA + S S S
Sbjct: 39 PSQAARQLSRPKQLVSRPVSSSSSAHPSQAARQLSPPKYPASRSVSNSSS 88
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 7 RQSPSRASPRTLRERRRVRHPXSLRAP--PHRVSRPQLRRPPPYPARQ 144
R+SPS R+ R R P R+P P R R PPPY AR+
Sbjct: 136 RRSPSYGR-RSYSPRARSPPPPRRRSPSPPPARGRSYSRSPPPYRARE 182
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 67 PXSLRAPPHRVSRPQLRRPPPYPARQLGSPS 159
P R P H S P PPP P Q +PS
Sbjct: 758 PAPPRLPTHSASPPPPTAPPPPPLGQTRAPS 788
>At4g31890.1 68417.m04532 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 518
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 456 DSIRPLFLLSIYLPSFINILRTRLLT 533
D++R L+ LSIY P+ IL T L+T
Sbjct: 295 DALRALYNLSIYQPNVSFILETDLIT 320
>At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomerase /
FK506-binding protein (ROF1) identical to rotamase FKBP
(ROF1) GB:U49453 [Arabidopsis thaliana] (Mol. Gen.
Genet. 252 (5), 510-517 (1996))
Length = 551
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 535 TVNNRVLKILINEGK*IDNRNKGLILSVKFI*KM 434
T +N+V+K ++ EG + N+G ++ VK I K+
Sbjct: 268 TDDNKVVKKVLKEGDGYERPNEGAVVKVKLIGKL 301
>At3g18770.1 68416.m02382 expressed protein
Length = 625
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +1
Query: 28 SPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYP 135
SP V HP S PPH P RR YP
Sbjct: 329 SPTRSDSHALVSHPCSRHLPPHPSDIPTGRRKESYP 364
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRP-PPYPARQL 147
P SP ASPR R V S + P R P+ P PP P L
Sbjct: 104 PRPTSPRVASPRVPSPRAEVPRTLSPKPPSPRAEVPRSLSPKPPSPRADL 153
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR 174
P SP +PR R P S R+ P R+ P+ P P P+ + SP ++QR
Sbjct: 253 PRPPSPLADAPRLDAPRPTTPKPPSPRSDPPRLDAPRPTTPKP-PSPRSVSP-RAVQR 308
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRP-PPYPARQL 147
P SP ASPR R V S + P R P+ P PP P L
Sbjct: 103 PRPTSPRVASPRVPSPRAEVPRTLSPKPPSPRAEVPRSLSPKPPSPRADL 152
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +1
Query: 1 PERQSPSRASPRTLRERRRVRHPXSLRAPPHRVSRPQLRRPPPYPARQLGSPSHSIQR 174
P SP +PR R P S R+ P R+ P+ P P P+ + SP ++QR
Sbjct: 252 PRPPSPLADAPRLDAPRPTTPKPPSPRSDPPRLDAPRPTTPKP-PSPRSVSP-RAVQR 307
>At1g36970.1 68414.m04608 hypothetical protein
Length = 439
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 396 INCKIIHVVLCRRWETK 346
I+CK++H +LCR+ TK
Sbjct: 74 ISCKLVHALLCRQLVTK 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,198,729
Number of Sequences: 28952
Number of extensions: 268557
Number of successful extensions: 872
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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